AAI clade 4-14 | MiGA Online

AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
- AAI clade 4-1 medoid: Acinetobacter courvalinii GCF 008802255 1
- AAI clade 4-2 medoid: Pseudomonas congelans GCF 900103225 1
- AAI clade 4-3 medoid: Pseudomonas monsensis GCF 014268495 2
- AAI clade 4-4 medoid: Pseudomonas nitroreducens GCF 012986245 1
- AAI clade 4-5 medoid: Pseudomonas azotoformans GCF 900624915 1
- AAI clade 4-6 medoid: Pseudomonas chengduensis GCF 900102635 1
- AAI clade 4-7 medoid: Acinetobacter bouvetii DSM 14964 CIP 107468 GCF 000373725 1
- AAI clade 4-8 medoid: Moraxella equi GCF 002027555 1
- AAI clade 4-9 medoid: Halomonas ventosae GCF 004363555 1
- AAI clade 4-10 medoid: Pseudomonas songnenensis GCF 003696315 1
- AAI clade 4-11 medoid: Pseudomonas plecoglossicida GCF 030160515 1
- AAI clade 4-12 medoid: Psychrobacter aquimaris GCF 016107525 1
- AAI clade 4-13 medoid: Alloalcanivorax xenomutans GCF 900217905 1
- AAI clade 4-14 medoid: Marinobacterium sediminicola GCF 900184155 1
  - AAI clade 4-14-1 medoid: Amphritea atlantica GCF 024347255 1
  - AAI clade 4-14-2 medoid: Aliamphritea hakodatensis GCF 024347195 1
  - AAI clade 4-14-3 medoid: Neptunomonas qingdaonensis GCF 016082375 1
  - AAI clade 4-14-4 medoid: Neptunomonas marina GCF 004005935 1
  - AAI clade 4-14-5 medoid: Nitrincola tibetensis GCF 003284585 1
  - AAI clade 4-14-6 medoid: Balneatrix alpica DSM 16621 GCF 000619885 1
  - AAI clade 4-14-7 medoid: Litoribrevibacter albus GCF 030159995 1
  - AAI clade 4-14-8 medoid: Litorivicinus lipolyticus GCF 009650135 1
  - AAI clade 4-14-9 medoid: Marinobacterium aestuarii GCF 001651805 1
  - AAI clade 4-14-10 medoid: Marinobacterium sediminicola GCF 900184155 1
  - AAI clade 4-14-11 medoid: Marinobacterium arenosum GCF 019795155 1
  - AAI clade 4-14-12 medoid: Marinobacterium jannaschii DSM 6295 GCF 000620085 1
  - AAI clade 4-14-13 medoid: Marinobacterium zhoushanense GCF 014641945 1
  - AAI clade 4-14-14 medoid: Marinobacterium mangrovicola GCF 004339595 1
  - AAI clade 4-14-15 medoid: Marinobacterium nitratireducens GCF 014645375 1
  - AAI clade 4-14-16 medoid: Motiliproteus coralliicola GCF 003345655 1
  - AAI clade 4-14-17 medoid: Motiliproteus sediminis GCF 017912535 1
  - AAI clade 4-14-18 medoid: Neptuniibacter halophilus GCF 030295765 1
  - AAI clade 4-14-19 medoid: Neptuniibacter marinus GCF 001597725 1
  - AAI clade 4-14-20 medoid: Neptunomonas phycophila GCF 001922575 1
  - AAI clade 4-14-21 medoid: Nitrincola alkalilacustris GCF 008973755 1
  - AAI clade 4-14-22 medoid: Nitrincola lacisaponensis GCF 000691225 1
  - AAI clade 4-14-23 medoid: Pokkaliibacter plantistimulans GCF 003194385 1
  - AAI clade 4-14-24 medoid: Pontibacterium granulatum GCF 029961155 1
- AAI clade 4-15 medoid: Salinicola lusitanus GCF 003206045 1
- AAI clade 4-16 medoid: Seongchinamella unica GCF 004354085 1
- AAI clade 4-17 medoid: Halomonas alkaliphila GCF 033842765 1
- AAI clade 4-18 medoid: Marinobacter flavimaris GCF 003363485 1
- AAI clade 4-19 medoid: Microbulbifer marinus GCF 900107725 1
- AAI clade 4-20 medoid: Acidithiobacillus ferrooxidans ATCC 23270 GCF 000021485 1
- AAI clade 4-21 medoid: Ectothiorhodospira shaposhnikovii GCF 022227765 1
- AAI clade 4-22 medoid: Thalassolituus alkanivorans GCF 020447205 1
- AAI clade 4-23 medoid: Electrothrix rattekaaiensis asm GCA 032595675 1
- AAI clade 4-24 medoid: Halopseudomonas gallaeciensis GCF 003444685 1
- AAI clade 4-25 medoid: Maridesulfovibrio salexigens DSM 2638 GCF 000023445 1
- AAI clade 4-26 medoid: Endozoicomonas gorgoniicola GCF 025562715 2
- AAI clade 4-27 medoid: Allochromatium humboldtianum GCF 013385175 1
- AAI clade 4-28 medoid: Marinomonas lutimaris GCF 019426345 1
- AAI clade 4-29 medoid: Thiothrix lacustris DSM 21227 GCF 000621325 1
AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
AAI clade 17 medoid: Dorea hominis GCF 014287705 1
AAI clade 18 medoid: Massilia putida GCF 001941825 1
AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1

AAI-based medoid clustering

A collaboration between