AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
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AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
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AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
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AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
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AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
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AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
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AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
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AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
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AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
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AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
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AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
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AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
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AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
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AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
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AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
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AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
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AAI clade 17
medoid: Dorea hominis GCF 014287705 1
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AAI clade 18
medoid: Massilia putida GCF 001941825 1
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AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
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AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
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AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
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AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
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AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
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AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 24-1
medoid: Avibacterium gallinarum GCF 900454485 1
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AAI clade 24-2
medoid: Haemophilus haemolyticus GCF 001679045 1
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AAI clade 24-3
medoid: Actinobacillus equuli GCF 900636745 1
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AAI clade 24-4
medoid: Haemophilus paraphrohaemolyticus GCF 002015045 1
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AAI clade 24-5
medoid: Pasteurella dagmatis ATCC 43325 GCF 000163475 1
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AAI clade 24-6
medoid: Aggregatibacter aphrophilus ATCC 33389 GCF 000226495 2
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AAI clade 24-7
medoid: Basfia succiniciproducens GCF 900101275 1
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AAI clade 24-8
medoid: Gallibacterium salpingitidis GCF 001678495 1
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AAI clade 24-9
medoid: Actinobacillus porcinus GCF 900773985 1
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AAI clade 24-10
medoid: Pasteurella testudinis DSM 23072 GCF 019633665 1
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AAI clade 24-11
medoid: Caviibacterium pharyngocola GCF 002795405 1
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AAI clade 24-12
medoid: Bisgaardia hudsonensis GCF 004345785 1
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AAI clade 24-13
medoid: Canicola haemoglobinophilus GCF 002015075 1
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AAI clade 24-14
medoid: Glaesserella australis GCF 003260095 1
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AAI clade 24-15
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 24-16
medoid: Phocoenobacter uteri GCF 900454895 1
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AAI clade 24-17
medoid: Rodentibacter mrazii GCF 001998825 1
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AAI clade 24-18
medoid: Anaerobiospirillum succiniciproducens DSM 6400 GCF 000482845 1
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AAI clade 24-19
medoid: Anaerobiospirillum thomasii GCF 900445255 1
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AAI clade 24-20
medoid: Conservatibacter flavescens GCF 002795425 1
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AAI clade 24-21
medoid: Dichelobacter nodosus GCF 001263335 1
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AAI clade 24-22
medoid: Psittacicella gerlachiana GCF 003585965 1
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AAI clade 24-23
medoid: Psittacicella hinzii GCF 003585935 1
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AAI clade 24-24
medoid: Rodentibacter rarus GCF 001998965 1
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AAI clade 24-25
medoid: Ruminobacter amylophilus GCF 900115655 1
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AAI clade 24-26
medoid: Spirabiliibacterium pneumoniae GCF 014884995 1
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AAI clade 24-27
medoid: Succinatimonas hippei YIT 12066 GCF 000188195 1
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AAI clade 24-28
medoid: Succinimonas amylolytica DSM 2873 GCF 000378405 1
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AAI clade 24-29
medoid: Succinivibrio dextrinosolvens DSM 3072 GCF 900167015 1
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AAI clade 24-30
medoid: Succinivibrio faecicola GCF 019448115 1
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AAI clade 24-31
medoid: Volucribacter amazonae GCF 029783845 1
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AAI clade 24-1
medoid: Avibacterium gallinarum GCF 900454485 1
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AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
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AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
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AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
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AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
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AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
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AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
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AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
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AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
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AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
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AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1