AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
    • AAI clade 18-1 medoid: Burkholderia cepacia GCF 900446175 1
    • AAI clade 18-2 medoid: Roseateles asaccharophilus GCF 004362405 1
    • AAI clade 18-3 medoid: Acidovorax delafieldii GCF 007993815 1
    • AAI clade 18-4 medoid: Morococcus cerebrosus GCF 000813705 1
    • AAI clade 18-5 medoid: Paraburkholderia caffeinilytica GCF 902859905 1
    • AAI clade 18-6 medoid: Ralstonia wenshanensis GCF 021173085 1
    • AAI clade 18-7 medoid: Chromobacterium piscinae GCF 021129175 1
    • AAI clade 18-8 medoid: Massilia puerhi GCF 009861485 1
      • AAI clade 18-8-1 medoid: Janthinobacterium kumbetense GCF 023703445 1
      • AAI clade 18-8-2 medoid: Herbaspirillum aquaticum GCF 002213425 1
      • AAI clade 18-8-3 medoid: Massilia puerhi GCF 009861485 1
      • AAI clade 18-8-4 medoid: Pelistega suis GCF 013133795 1
      • AAI clade 18-8-5 medoid: Zoogloea oryzae GCF 030161255 1
      • AAI clade 18-8-6 medoid: Duganella levis GCF 009857605 1
      • AAI clade 18-8-7 medoid: Collimonas pratensis GCF 001584185 1
      • AAI clade 18-8-8 medoid: Massilia violaceinigra GCF 002752675 1
      • AAI clade 18-8-9 medoid: Nitrosomonas supralitoralis GCF 003011925 2
      • AAI clade 18-8-10 medoid: Pseudoduganella albidiflava GCF 004322755 1
      • AAI clade 18-8-11 medoid: Sulfuriferula multivorans GCF 003851125 1
      • AAI clade 18-8-12 medoid: Thiomonas intermedia GCF 002028405 1
      • AAI clade 18-8-13 medoid: Dechloromonas hortensis GCF 009469765 1
        • AAI clade 18-8-13-1 medoid: Azonexus fungiphilus GCF 003634965 1
        • AAI clade 18-8-13-2 medoid: Azovibrio restrictus DSM 23866 GCF 000429665 1
        • AAI clade 18-8-13-3 medoid: Dechloromonas agitata GCF 028864255 1
        • AAI clade 18-8-13-4 medoid: Dechloromonas hortensis GCF 009469765 1
        • AAI clade 18-8-13-5 medoid: Dechloromonas hankyongensis GCF 022012295 1
          1 dataset: Dechloromonas hankyongensis GCF 022012295 1 (AAI: 100.0%)
        • AAI clade 18-8-13-6 medoid: Oryzomicrobium terrae GCF 008274805 1
        • AAI clade 18-8-13-7 medoid: Propionivibrio limicola GCF 009469695 1
        • AAI clade 18-8-13-8 medoid: Propionivibrio soli GCF 025770765 1
      • AAI clade 18-8-14 medoid: Geothrix fermentans DSM 14018 GCF 000428885 1
      • AAI clade 18-8-15 medoid: Limnobacter alexandrii GCF 005871185 1
      • AAI clade 18-8-16 medoid: Methyloversatilis universalis FAM5 GCF 000214035 2
      • AAI clade 18-8-17 medoid: Undibacterium macrobrachii GCF 014652415 1
      • AAI clade 18-8-18 medoid: Undibacterium crateris GCF 010078235 1
    • AAI clade 18-9 medoid: Cupriavidus alkaliphilus GCF 900094595 1
    • AAI clade 18-10 medoid: Pandoraea sputorum GCF 000814845 2
    • AAI clade 18-11 medoid: Paraburkholderia acidiphila GCF 009789655 1
    • AAI clade 18-12 medoid: Caballeronia zhejiangensis GCF 000698575 1
    • AAI clade 18-13 medoid: Silvimonas iriomotensis GCF 014645535 1
    • AAI clade 18-14 medoid: Corallococcus coralloides DSM 2259 GCF 000255295 1
    • AAI clade 18-15 medoid: Methylovorus mays GCF 020531915 1
    • AAI clade 18-16 medoid: Polynucleobacter corsicus GCF 018688255 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1