AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
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AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
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AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
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AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
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AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
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AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
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AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
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AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
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AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
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AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
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AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
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AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
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AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
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AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
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AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
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AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
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AAI clade 17
medoid: Dorea hominis GCF 014287705 1
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AAI clade 18
medoid: Massilia putida GCF 001941825 1
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AAI clade 18-1
medoid: Burkholderia cepacia GCF 900446175 1
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AAI clade 18-2
medoid: Roseateles asaccharophilus GCF 004362405 1
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AAI clade 18-3
medoid: Acidovorax delafieldii GCF 007993815 1
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AAI clade 18-4
medoid: Morococcus cerebrosus GCF 000813705 1
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AAI clade 18-5
medoid: Paraburkholderia caffeinilytica GCF 902859905 1
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AAI clade 18-6
medoid: Ralstonia wenshanensis GCF 021173085 1
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AAI clade 18-7
medoid: Chromobacterium piscinae GCF 021129175 1
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AAI clade 18-8
medoid: Massilia puerhi GCF 009861485 1
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AAI clade 18-8-1
medoid: Janthinobacterium kumbetense GCF 023703445 1
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AAI clade 18-8-2
medoid: Herbaspirillum aquaticum GCF 002213425 1
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AAI clade 18-8-3
medoid: Massilia puerhi GCF 009861485 1
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AAI clade 18-8-4
medoid: Pelistega suis GCF 013133795 1
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AAI clade 18-8-5
medoid: Zoogloea oryzae GCF 030161255 1
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AAI clade 18-8-6
medoid: Duganella levis GCF 009857605 1
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AAI clade 18-8-7
medoid: Collimonas pratensis GCF 001584185 1
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AAI clade 18-8-8
medoid: Massilia violaceinigra GCF 002752675 1
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AAI clade 18-8-9
medoid: Nitrosomonas supralitoralis GCF 003011925 2
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AAI clade 18-8-10
medoid: Pseudoduganella albidiflava GCF 004322755 1
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AAI clade 18-8-11
medoid: Sulfuriferula multivorans GCF 003851125 1
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AAI clade 18-8-12
medoid: Thiomonas intermedia GCF 002028405 1
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AAI clade 18-8-13
medoid: Dechloromonas hortensis GCF 009469765 1
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AAI clade 18-8-13-1
medoid: Azonexus fungiphilus GCF 003634965 1
2 datasets: Azonexus fungiphilus GCF 003634965 1 (AAI: 100.0%) and Azonexus hydrophilus DSM 23864 GCF 000429605 1 (AAI: 81.77%)
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AAI clade 18-8-13-2
medoid: Azovibrio restrictus DSM 23866 GCF 000429665 1
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AAI clade 18-8-13-3
medoid: Dechloromonas agitata GCF 028864255 1
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AAI clade 18-8-13-4
medoid: Dechloromonas hortensis GCF 009469765 1
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AAI clade 18-8-13-5
medoid: Dechloromonas hankyongensis GCF 022012295 1
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AAI clade 18-8-13-6
medoid: Oryzomicrobium terrae GCF 008274805 1
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AAI clade 18-8-13-7
medoid: Propionivibrio limicola GCF 009469695 1
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AAI clade 18-8-13-8
medoid: Propionivibrio soli GCF 025770765 1
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AAI clade 18-8-13-1
medoid: Azonexus fungiphilus GCF 003634965 1
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AAI clade 18-8-14
medoid: Geothrix fermentans DSM 14018 GCF 000428885 1
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AAI clade 18-8-15
medoid: Limnobacter alexandrii GCF 005871185 1
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AAI clade 18-8-16
medoid: Methyloversatilis universalis FAM5 GCF 000214035 2
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AAI clade 18-8-17
medoid: Undibacterium macrobrachii GCF 014652415 1
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AAI clade 18-8-18
medoid: Undibacterium crateris GCF 010078235 1
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AAI clade 18-8-1
medoid: Janthinobacterium kumbetense GCF 023703445 1
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AAI clade 18-9
medoid: Cupriavidus alkaliphilus GCF 900094595 1
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AAI clade 18-10
medoid: Pandoraea sputorum GCF 000814845 2
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AAI clade 18-11
medoid: Paraburkholderia acidiphila GCF 009789655 1
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AAI clade 18-12
medoid: Caballeronia zhejiangensis GCF 000698575 1
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AAI clade 18-13
medoid: Silvimonas iriomotensis GCF 014645535 1
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AAI clade 18-14
medoid: Corallococcus coralloides DSM 2259 GCF 000255295 1
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AAI clade 18-15
medoid: Methylovorus mays GCF 020531915 1
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AAI clade 18-16
medoid: Polynucleobacter corsicus GCF 018688255 1
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AAI clade 18-1
medoid: Burkholderia cepacia GCF 900446175 1
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AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
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AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
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AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
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AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
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AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
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AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
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AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
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AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
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AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
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AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
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AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
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AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
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AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
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AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
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AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1