AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
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AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
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AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
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AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
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AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
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AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
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AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
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AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
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AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
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AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
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AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
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AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
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AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
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AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
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AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
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AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
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AAI clade 17
medoid: Dorea hominis GCF 014287705 1
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AAI clade 17-1
medoid: Blautia hominis GCF 002270465 1
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AAI clade 17-2
medoid: Clostridium scindens ATCC 35704 GCF 000154505 1
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AAI clade 17-2-1
medoid: Clostridium scindens ATCC 35704 GCF 000154505 1
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AAI clade 17-2-1-1
medoid: Faecalicatena faecalis GCF 012524165 2
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AAI clade 17-2-1-1-1
medoid: Mediterraneibacter gnavus ATCC 29149 GCF 008121495 1
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AAI clade 17-2-1-1-2
medoid: Mediterraneibacter hominis GCF 014287475 1
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AAI clade 17-2-1-1-3
medoid: Faecalicatena faecalis GCF 012524165 2
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AAI clade 17-2-1-1-4
medoid: Hespellia stercorisuis DSM 15480 GCF 900142165 1
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AAI clade 17-2-1-1-5
medoid: Mediterraneibacter agrestimuris GCF 943193195 1
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AAI clade 17-2-1-1-6
medoid: Mediterraneibacter butyricigenes GCF 003574295 1
1 dataset: Mediterraneibacter butyricigenes GCF 003574295 1 (AAI: 100.0%)
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AAI clade 17-2-1-1-7
medoid: Ruminococcus hominis GCF 014287355 1
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AAI clade 17-2-1-1-8
medoid: Schaedlerella arabinosiphila GCF 003885045 1
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AAI clade 17-2-1-1-1
medoid: Mediterraneibacter gnavus ATCC 29149 GCF 008121495 1
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AAI clade 17-2-1-2
medoid: Anaerostipes hominis ex Lee et al 2021 GCF 002270485 1
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AAI clade 17-2-1-3
medoid: Clostridium hylemonae DSM 15053 GCF 000156515 1
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AAI clade 17-2-1-4
medoid: Anaerosacchariphilus hominis GCF 014290175 1
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AAI clade 17-2-1-5
medoid: Sellimonas catena GCF 027924685 1
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AAI clade 17-2-1-6
medoid: Coprococcus aceti GCF 025567285 1
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AAI clade 17-2-1-7
medoid: Frisingicoccus caecimuris GCF 004340975 1
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AAI clade 17-2-1-8
medoid: Diplocloster agilis GCF 019042275 1
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AAI clade 17-2-1-9
medoid: Dorea longicatena DSM 13814 GCF 000154065 1
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AAI clade 17-2-1-10
medoid: Eisenbergiella massiliensis GCF 900243045 1
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AAI clade 17-2-1-11
medoid: Eubacterium segne GCF 014287775 1
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AAI clade 17-2-1-12
medoid: Bariatricus massiliensis GCF 900086725 1
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AAI clade 17-2-1-13
medoid: Herbinix luporum GCF 900070325 1
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AAI clade 17-2-1-14
medoid: Zhenhengia yiwuensis GCF 014384995 1
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AAI clade 17-2-1-15
medoid: Mediterraneibacter catenae GCF 008691045 1
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AAI clade 17-2-1-16
medoid: Vallitalea guaymasensis GCF 003313305 1
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AAI clade 17-2-1-17
medoid: Lachnotalea glycerini GCF 003201285 1
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AAI clade 17-2-1-18
medoid: Anaerostipes hadrus ATCC 29173 JCM 17467 GCF 000332875 2
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AAI clade 17-2-1-19
medoid: Anaerocolumna sedimenticola GCF 009931695 1
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AAI clade 17-2-1-20
medoid: Clostridium polysaccharolyticum GCF 900111595 1
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AAI clade 17-2-1-21
medoid: Anaerotignum faecicola GCF 003865035 1
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AAI clade 17-2-1-22
medoid: Candidatus Colimonas fimequi GCA 018065295 1
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AAI clade 17-2-1-23
medoid: Catonella massiliensis GCF 016651435 1
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AAI clade 17-2-1-24
medoid: Clostridium colinum GCF 940677205 1
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AAI clade 17-2-1-25
medoid: Defluviitalea phaphyphila GCF 001466305 1
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AAI clade 17-2-1-26
medoid: Jutongia hominis GCF 014384965 1
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AAI clade 17-2-1-27
medoid: Leptospira yasudae GCF 003545925 1
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AAI clade 17-2-1-28
medoid: Natranaerovirga hydrolytica GCF 004339095 1
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AAI clade 17-2-1-29
medoid: Parablautia muri GCF 009917485 1
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AAI clade 17-2-1-1
medoid: Faecalicatena faecalis GCF 012524165 2
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AAI clade 17-2-2
medoid: Roseburia rectibacter GCF 014287515 2
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AAI clade 17-2-1
medoid: Clostridium scindens ATCC 35704 GCF 000154505 1
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AAI clade 17-3
medoid: Clostridium moniliforme GCF 017873235 1
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AAI clade 17-4
medoid: Romboutsia timonensis GCF 900106845 1
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AAI clade 17-5
medoid: Faecalibacterium duncaniae GCF 010509575 1
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AAI clade 17-6
medoid: Lawsonibacter hominis GCF 014287895 1
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AAI clade 17-7
medoid: Clostridium indicum GCF 003432035 1
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AAI clade 17-8
medoid: Faecalispora jeddahensis GCF 000577335 1
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AAI clade 17-1
medoid: Blautia hominis GCF 002270465 1
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AAI clade 18
medoid: Massilia putida GCF 001941825 1
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AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
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AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
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AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
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AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
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AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
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AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
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AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
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AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
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AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
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AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
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AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
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AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
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AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
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AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
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AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1