AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
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AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
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AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
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AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
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AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
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AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
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AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
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AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
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AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
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AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
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AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
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AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
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AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
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AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
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AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
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AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
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AAI clade 17
medoid: Dorea hominis GCF 014287705 1
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AAI clade 17-1
medoid: Blautia hominis GCF 002270465 1
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AAI clade 17-1-1
medoid: Blautia hominis GCF 002270465 1
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AAI clade 17-1-2
medoid: Blautia argi GCF 003287895 1
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AAI clade 17-1-3
medoid: Marvinbryantia formatexigens DSM 14469 GCF 025148285 1
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AAI clade 17-1-4
medoid: Anaerotignum neopropionicum GCF 001571775 1
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AAI clade 17-1-5
medoid: Blautia ammoniilytica GCF 025566965 1
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AAI clade 17-1-6
medoid: Blautia fusiformis GCF 020686995 1
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AAI clade 17-1-7
medoid: Blautia hydrogenotrophica DSM 10507 GCF 000157975 1
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AAI clade 17-1-8
medoid: Blautia wexlerae DSM 19850 GCF 000484655 1
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AAI clade 17-1-9
medoid: Blautia intestinalis GCF 014297355 1
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AAI clade 17-1-10
medoid: Lactonifactor longoviformis DSM 17459 GCF 900129135 1
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AAI clade 17-1-11
medoid: Ruminococcus gauvreauii DSM 19829 GCF 000425525 1
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AAI clade 17-1-12
medoid: Anaerotignum lactatifermentans DSM 14214 GCF 900142265 1
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AAI clade 17-1-13
medoid: Bilifractor porci GCF 009696005 1
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AAI clade 17-1-14
medoid: Oliverpabstia intestinalis GCF 009696065 1
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AAI clade 17-1-15
medoid: Blautia liquoris GCF 015159595 1
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AAI clade 17-1-16
medoid: Candidatus Blautia equi GCA 018064695 1
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AAI clade 17-1-17
medoid: Candidatus Equihabitans merdae GCA 018065025 1
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AAI clade 17-1-18
medoid: Chordicoccus furentiruminis GCF 019355395 1
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AAI clade 17-1-19
medoid: Fusicatenibacter faecihominis GCF 020686945 1
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AAI clade 17-1-20
medoid: Hominisplanchenecus faecis GCF 020687205 1
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AAI clade 17-1-21
medoid: Hominisplanchenecus murintestinalis GCF 943193015 1
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AAI clade 17-1-22
medoid: Muricoprocola aceti GCF 025567005 1
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AAI clade 17-1-23
medoid: Murimonas intestini GCF 024622195 1
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AAI clade 17-1-24
medoid: Novisyntrophococcus fermenticellae GCF 018866245 1
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AAI clade 17-1-25
medoid: Porcincola intestinalis GCF 009696445 1
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AAI clade 17-1-26
medoid: Shuttleworthia satelles DSM 14600 GCF 000160115 1
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AAI clade 17-1-27
medoid: Wansuia hejianensis GCF 014337215 1
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AAI clade 17-1-1
medoid: Blautia hominis GCF 002270465 1
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AAI clade 17-2
medoid: Clostridium scindens ATCC 35704 GCF 000154505 1
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AAI clade 17-3
medoid: Clostridium moniliforme GCF 017873235 1
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AAI clade 17-4
medoid: Romboutsia timonensis GCF 900106845 1
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AAI clade 17-5
medoid: Faecalibacterium duncaniae GCF 010509575 1
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AAI clade 17-6
medoid: Lawsonibacter hominis GCF 014287895 1
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AAI clade 17-7
medoid: Clostridium indicum GCF 003432035 1
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AAI clade 17-8
medoid: Faecalispora jeddahensis GCF 000577335 1
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AAI clade 17-1
medoid: Blautia hominis GCF 002270465 1
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AAI clade 18
medoid: Massilia putida GCF 001941825 1
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AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
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AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
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AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
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AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
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AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
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AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
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AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
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AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
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AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
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AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
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AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
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AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
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AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
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AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
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AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1