AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
    • AAI clade 17-1 medoid: Blautia hominis GCF 002270465 1
      • AAI clade 17-1-1 medoid: Blautia hominis GCF 002270465 1
      • AAI clade 17-1-2 medoid: Blautia argi GCF 003287895 1
      • AAI clade 17-1-3 medoid: Marvinbryantia formatexigens DSM 14469 GCF 025148285 1
      • AAI clade 17-1-4 medoid: Anaerotignum neopropionicum GCF 001571775 1
      • AAI clade 17-1-5 medoid: Blautia ammoniilytica GCF 025566965 1
      • AAI clade 17-1-6 medoid: Blautia fusiformis GCF 020686995 1
      • AAI clade 17-1-7 medoid: Blautia hydrogenotrophica DSM 10507 GCF 000157975 1
      • AAI clade 17-1-8 medoid: Blautia wexlerae DSM 19850 GCF 000484655 1
      • AAI clade 17-1-9 medoid: Blautia intestinalis GCF 014297355 1
      • AAI clade 17-1-10 medoid: Lactonifactor longoviformis DSM 17459 GCF 900129135 1
      • AAI clade 17-1-11 medoid: Ruminococcus gauvreauii DSM 19829 GCF 000425525 1
      • AAI clade 17-1-12 medoid: Anaerotignum lactatifermentans DSM 14214 GCF 900142265 1
      • AAI clade 17-1-13 medoid: Bilifractor porci GCF 009696005 1
      • AAI clade 17-1-14 medoid: Oliverpabstia intestinalis GCF 009696065 1
        2 datasets: Blautia faecicola GCF 004123145 1 (AAI: 94.91%) and Oliverpabstia intestinalis GCF 009696065 1 (AAI: 100.0%)
      • AAI clade 17-1-15 medoid: Blautia liquoris GCF 015159595 1
      • AAI clade 17-1-16 medoid: Candidatus Blautia equi GCA 018064695 1
      • AAI clade 17-1-17 medoid: Candidatus Equihabitans merdae GCA 018065025 1
      • AAI clade 17-1-18 medoid: Chordicoccus furentiruminis GCF 019355395 1
      • AAI clade 17-1-19 medoid: Fusicatenibacter faecihominis GCF 020686945 1
      • AAI clade 17-1-20 medoid: Hominisplanchenecus faecis GCF 020687205 1
      • AAI clade 17-1-21 medoid: Hominisplanchenecus murintestinalis GCF 943193015 1
      • AAI clade 17-1-22 medoid: Muricoprocola aceti GCF 025567005 1
      • AAI clade 17-1-23 medoid: Murimonas intestini GCF 024622195 1
      • AAI clade 17-1-24 medoid: Novisyntrophococcus fermenticellae GCF 018866245 1
      • AAI clade 17-1-25 medoid: Porcincola intestinalis GCF 009696445 1
      • AAI clade 17-1-26 medoid: Shuttleworthia satelles DSM 14600 GCF 000160115 1
      • AAI clade 17-1-27 medoid: Wansuia hejianensis GCF 014337215 1
    • AAI clade 17-2 medoid: Clostridium scindens ATCC 35704 GCF 000154505 1
    • AAI clade 17-3 medoid: Clostridium moniliforme GCF 017873235 1
    • AAI clade 17-4 medoid: Romboutsia timonensis GCF 900106845 1
    • AAI clade 17-5 medoid: Faecalibacterium duncaniae GCF 010509575 1
    • AAI clade 17-6 medoid: Lawsonibacter hominis GCF 014287895 1
    • AAI clade 17-7 medoid: Clostridium indicum GCF 003432035 1
    • AAI clade 17-8 medoid: Faecalispora jeddahensis GCF 000577335 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1