AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
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AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
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AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
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AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
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AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
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AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
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AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
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AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
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AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
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AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
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AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
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AAI clade 11-1
medoid: Streptomyces tanashiensis GCF 014648895 1
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AAI clade 11-2
medoid: Kribbella sindirgiensis GCF 004331435 1
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AAI clade 11-3
medoid: Corynebacterium lehmanniae GCF 027570055 1
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AAI clade 11-4
medoid: Streptomyces sabulosicollis GCF 016103465 1
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AAI clade 11-5
medoid: Streptomyces tricolor GCF 002155905 1
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AAI clade 11-6
medoid: Nocardiopsis dassonvillei GCF 900638215 1
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AAI clade 11-7
medoid: Nonomuraea jabiensis GCF 014204795 1
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AAI clade 11-7-1
medoid: Nonomuraea jabiensis GCF 014204795 1
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AAI clade 11-7-1-1
medoid: Streptosporangium roseum DSM 43021 GCF 000024865 1
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AAI clade 11-7-1-2
medoid: Nonomuraea jabiensis GCF 014204795 1
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AAI clade 11-7-1-2-1
medoid: Nonomuraea cavernae GCF 014646355 1
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AAI clade 11-7-1-2-2
medoid: Nonomuraea coxensis DSM 45129 GCF 000379885 1
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AAI clade 11-7-1-2-3
medoid: Nonomuraea corallina GCF 027620315 1
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AAI clade 11-7-1-2-4
medoid: Nonomuraea glycinis GCF 014646515 1
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AAI clade 11-7-1-2-5
medoid: Nonomuraea deserti GCF 004348685 1
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AAI clade 11-7-1-2-6
medoid: Nonomuraea phyllanthi GCF 006334985 2
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AAI clade 11-7-1-2-7
medoid: Frankia canadensis GCF 900197875 1
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AAI clade 11-7-1-2-8
medoid: Modestobacter caceresii GCF 000761485 1
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AAI clade 11-7-1-2-9
medoid: Nonomuraea dietziae GCF 014195505 1
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AAI clade 11-7-1-2-10
medoid: Nonomuraea angiospora GCF 014873145 1
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AAI clade 11-7-1-2-11
medoid: Nonomuraea antri GCF 013283785 1
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AAI clade 11-7-1-2-12
medoid: Nonomuraea aridisoli GCF 003236395 1
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AAI clade 11-7-1-2-13
medoid: Nonomuraea guangzhouensis GCF 019396345 1
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AAI clade 11-7-1-2-14
medoid: Nonomuraea basaltis GCF 005893125 1
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AAI clade 11-7-1-2-15
medoid: Actinomadura parvosata subsp. kistnae GCF 002057455 1
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AAI clade 11-7-1-2-16
medoid: Nonomuraea ceibae GCF 019396325 1
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AAI clade 11-7-1-2-17
medoid: Nonomuraea cypriaca GCF 015645445 1
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AAI clade 11-7-1-2-18
medoid: Nonomuraea endophytica GCF 014203235 1
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AAI clade 11-7-1-2-19
medoid: Nonomuraea fuscirosea GCF 003001935 1
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AAI clade 11-7-1-2-20
medoid: Nonomuraea muscovyensis GCF 014207745 1
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AAI clade 11-7-1-2-21
medoid: Nonomuraea lactucae GCF 003313395 1
1 dataset: Nonomuraea lactucae GCF 003313395 1 (AAI: 100.0%)
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AAI clade 11-7-1-2-22
medoid: Nonomuraea maritima GCF 900100395 1
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AAI clade 11-7-1-2-23
medoid: Nonomuraea roseoviolacea subsp. carminata GCF 024172185 1
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AAI clade 11-7-1-2-24
medoid: Nonomuraea pusilla GCF 900109355 1
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AAI clade 11-7-1-2-25
medoid: Nonomuraea rhizosphaerae GCF 019396405 1
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AAI clade 11-7-1-2-26
medoid: Nonomuraea sediminis GCF 018531495 1
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AAI clade 11-7-1-2-27
medoid: Nonomuraea solani GCF 900108335 1
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AAI clade 11-7-1-2-28
medoid: Nonomuraea soli GCF 013761175 1
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AAI clade 11-7-1-2-29
medoid: Nonomuraea spiralis GCF 014648435 1
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AAI clade 11-7-1-2-30
medoid: Nonomuraea typhae GCF 009760925 1
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AAI clade 11-7-1-2-31
medoid: Nonomuraea zeae GCF 005889725 1
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AAI clade 11-7-1-2-32
medoid: Spongiactinospora gelatinilytica GCF 003236385 1
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AAI clade 11-7-1-2-33
medoid: Thermoactinospora rubra GCF 002093975 1
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AAI clade 11-7-1-2-34
medoid: Thermostaphylospora chromogena GCF 900099985 1
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AAI clade 11-7-1-2-35
medoid: Poriferisocius aerobius asm GCA 028278955 1
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AAI clade 11-7-1-2-36
medoid: Poriferisocius anaerobius asm GCA 028278785 1
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AAI clade 11-7-1-2-1
medoid: Nonomuraea cavernae GCF 014646355 1
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AAI clade 11-7-1-3
medoid: Patulibacter brassicae GCF 033949425 1
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AAI clade 11-7-1-1
medoid: Streptosporangium roseum DSM 43021 GCF 000024865 1
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AAI clade 11-7-2
medoid: Microbispora siamensis GCF 016863095 1
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AAI clade 11-7-1
medoid: Nonomuraea jabiensis GCF 014204795 1
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AAI clade 11-8
medoid: Nocardioides pinisoli GCF 024199985 1
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AAI clade 11-9
medoid: Actinomadura citrea GCF 013409045 1
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AAI clade 11-1
medoid: Streptomyces tanashiensis GCF 014648895 1
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AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
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AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
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AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
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AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
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AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
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AAI clade 17
medoid: Dorea hominis GCF 014287705 1
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AAI clade 18
medoid: Massilia putida GCF 001941825 1
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AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
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AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
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AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
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AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
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AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
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AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
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AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
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AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
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AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
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AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
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AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
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AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
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AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
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AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
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AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
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AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1