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Shikimatogenerans bostrichidophilus

Citation

Formal styling
Shikimatogenerans bostrichidophilus Kiefer et al., 2023 (valid 2024)
Effective publication
Kiefer et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:vppriic7 (validated)
Cannonical URL
https://seqco.de/i:32944

Nomenclature

Rank
Species
Syllabication
bos.tri.chi.do.phi.lus
Etymology
L. n. Bostrichidae, a family of beetles known as wood borers.; N.L. masc. adj. suff. -philus, friend or loving; N.L. masc. adj. bostrichidophilus, bacteria associated with Bostrichidae beetles
Nomenclatural type
NCBI Assembly: GCA_029851105.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
"Shikimatogenerans bostrichidophilus" is a taxonomic designation that combines two key elements reflecting the characteristics and associations of a particular organism. The genus name "Shikimatogenerans" signifies the organism's notable ability to engage in the shikimate pathway, a crucial metabolic route. The term "bostrichidophilus" is a compound that implies an association with the Bostrichidae family, specifically beetles known as wood borers.

The combination of these two elements suggests that the organism possesses the metabolic capability related to the shikimate pathway and exhibits an association or affinity with beetles belonging to the Bostrichidae family, known for their wood-boring habits. This taxonomic designation encapsulates both biochemical and ecological aspects, providing insights into the organism's functional traits and ecological niche within the context of its relationship with wood-boring beetles.
Notes
The use of the connecting vowel -i- would be preferred, resulting in the spelling "bostrichidiphilus", but the effectively published spelling has been preserved following Rule 48.
Classification
Bacteria » Bacteroidota » Flavobacteriia » Flavobacteriales » Flavobacteriaceae » Shikimatogenerans » Shikimatogenerans bostrichidophilus
Parent
Shikimatogenerans

Genomics

Accession
NCBI Assembly:GCA_029851105.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
242.0 ×
Source
Other features
  • G+C Content: 13.5%
  • Coding Density: 91.04%
  • Codon Table: 11
  • N50: 177,918 bp
  • Contigs: 1
  • Largest Contig: 177,918 bp
  • Assembly Length: 177,918 bp
  • Ambiguous Assembly Fraction: 0.065%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Kiefer, Julian 6 months ago
Submitted by
Kiefer, Julian 3 months ago
Curators
Endorsed by
Palmer, Marike 3 months ago
Validated by
Palmer, Marike 3 months ago

Publications
3

Citation Title
Xue et al., 2023, Journal of Stored Products Research Microbiota composition of allopatric laboratory and wild populations of Rhyzopertha dominica
Hirota et al., 2023, Applied Entomology and Zoology Localization of symbiotic bacteria in embryogenesis of the lesser grain borer Rhyzopertha dominica and the African powderpost beetle Lyctus africanus (Coleoptera: Bostrichidae)
Kiefer et al., 2023, The ISME Journal Cuticle supplementation and nitrogen recycling by a dual bacterial symbiosis in a family of xylophagous beetles
Effective publication


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