Spongiicolonus versatilisTs


Citation

Formal styling
Spongiicolonus versatilisTs Nguyen et al., 2023 (valid 2024)
Proposed in
Nguyen et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:44vcemye (validated)
Cannonical URL
https://seqco.de/i:32578

Nomenclature

Rank
Species
Syllabication
ver.sa.ti'lis
Etymology
L. masc. adj. versatilis, versatile
Nomenclatural type
NCBI Assembly: GCA_028286165.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
A sponge symbiont with a versatile metabolism
Notes
The calculated completeness of the type genome has been deemed an underestimation on the basis of its biology.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Arenicellales » Spongiicolonaceae » Spongiicolonus » Spongiicolonus versatilisTs
Parent
Spongiicolonus

Genomics

Accession
NCBI Assembly:GCA_028286165.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 81.15%
  • Contamination: 1.22%
  • Quality: 75.05
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 26.0%)
  • 0 23S rRNAs
  • tRNAs for 15 amino acids
Sequencing depth
10.0 ×
Source
See all sources
Other features
  • G+C Content: 64.61%
  • Coding Density: 93.95%
  • Codon Table: 11
  • N50: 10,525 bp
  • Contigs: 218
  • Largest Contig: 35,943bp
  • Assembly Length: 1,830,795 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness was estimates with CheckM, which might underestimate completeness for divergent symbiont clades
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Thomas, Torsten 6 months ago
Submitted by
Thomas, Torsten about 1 month ago
Curators
Endorsed by
Palmer, Marike 22 days ago
Validated by
Palmer, Marike 21 days ago

Publications
1

Citation Title
Nguyen et al., 2023, Systematic and Applied Microbiology Functional characterization and taxonomic classification of novel gammaproteobacterial diversity in sponges
Proposed this name



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