Genome sc|0000791


Database

NCBI Assembly

Accession

GCA_028286165.1

Genomics

Accession
NCBI Assembly:GCA_028286165.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 81.15%
  • Contamination: 1.22%
  • Quality: 75.05
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 26.0%)
  • 0 23S rRNAs
  • tRNAs for 15 amino acids
Sequencing depth
10.0 ×
Source
See all sources
Other features
  • G+C Content: 64.61%
  • Coding Density: 93.95%
  • Codon Table: 11
  • N50: 10,525 bp
  • Contigs: 218
  • Largest Contig: 35,943bp
  • Assembly Length: 1,830,795 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness was estimates with CheckM, which might underestimate completeness for divergent symbiont clades
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2014-08
Location
Lat Lon: 18.83 S 147.68 E
Toponym
Geo Loc Name: Australia: Davies Reef, Great Barrier Reef S13 • Australia: Davies Reef, Great Barrier Reef S14 • Australia: Davies Reef, Great Barrier Reef S15
Environment
Env Material: Seawater
Env Biome: Sponge
Isolation Source: sponge tissue
Other
Host: Stylissa flabelliformis
Depth: 10-15m
Package
Ncbi Submission Package: MIMS.me.host-associated.6.0
All retrieved samples

Metadata retrieved about 1 month ago


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