Hepatoplasma vulgare


Citation

Formal styling
Hepatoplasma vulgare Kawato et al., 2024
Effective publication
Kawato et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:zkcp7nm0 (validated)
Cannonical URL
https://seqco.de/i:23840

Nomenclature

Rank
Species
Syllabication
vul.ga're
Etymology
L. neut. adj. vulgare, common
Nomenclatural type
INSDC Nucleotide: AP027131.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Symbiont of the common pill bug Armadillidium vulgare
Classification
Bacteria » Mycoplasmatota » Mollicutes » Mycoplasmatales » “Hepatoplasmataceae” » Hepatoplasma » Hepatoplasma vulgare
Parent
Hepatoplasma

Genomics

Accession
INSDC Nucleotide:AP027131.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
53.0 ×
Source
Other features
  • G+C Content: 22.7%
  • Coding Density: 91.72%
  • Codon Table: 4
  • N50: 662,108 bp
  • Contigs: 1
  • Largest Contig: 662,108 bp
  • Assembly Length: 662,108 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
We used ONT reads to assemble the MAG (AP027131.1) into a circular contig, which has undergone long- and short-read-based polishing and some manual curation, followed by annotation using DFAST. Despite the somewhat lower scores indicated by the automatic estimation pipeline, we are confident in the completeness and integrity of the genome. 
Automated checks
Complete
See additional details

Metadata

Search sequences
Local history
Registered by
Kawato, Satoshi over 1 year ago
Submitted by
Kawato, Satoshi about 2 months ago
Curators
Endorsed by
Palmer, Marike about 1 month ago
Validated by
Palmer, Marike about 1 month ago

Publications
2

Citation Title
Kawato et al., 2024, Access Microbiology Metagenome-assembled genomes of three Hepatoplasmataceae provide insights into isopod-mollicute symbiosis
Effective publication
Kawato et al., 2023, Metagenome-assembled genomes of three Hepatoplasmataceae provide insights into isopod-mollicute symbiosis



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  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license