JSON

Genome sc|0000276

Name

Hepatoplasma vulgare

Database

INSDC Nucleotide

Accession

AP027131.1

Genomics

Accession
INSDC Nucleotide:AP027131.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
53.0 ×
Source
Other features
  • G+C Content: 22.7%
  • Coding Density: 91.72%
  • Codon Table: 4
  • N50: 662,108 bp
  • Contigs: 1
  • Largest Contig: 662,108 bp
  • Assembly Length: 662,108 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
We used ONT reads to assemble the MAG (AP027131.1) into a circular contig, which has undergone long- and short-read-based polishing and some manual curation, followed by annotation using DFAST. Despite the somewhat lower scores indicated by the automatic estimation pipeline, we are confident in the completeness and integrity of the genome. 
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2021-09-06
Location
Lat Lon: 35.62579081 N 139.74790018 E
Toponym
Geo Loc Name: Japan:Tokyo
Environment
Isolation Source: not applicable
Other
Host: not applicable
Package
Ncbi Submission Package: Invertebrate.1.0
Biosamplemodel: Invertebrate
All retrieved samples
Metadata retrieved about 2 months ago


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