Poriferisocius aerobiusTs


Citation

Formal styling
Poriferisocius aerobiusTs Nguyen et al., 2023
Proposed in
Nguyen et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:v1sky3wb (validated)
Cannonical URL
https://seqco.de/i:23658

Nomenclature

Rank
Species
Syllabication
ae.ro'bi.us
Etymology
Gr. masc. n. aer, air; Gr. masc. n. bios, life; N.L. masc. adj. aerobius, one who lives with air
Nomenclatural type
NCBI Assembly: GCA_028278955.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Symbiont found to be enriched in sponge microbiomes, and no other environments. 
Classification
Bacteria » Actinomycetota » Acidimicrobiia » Acidimicrobiales » Hopanoidiivorantaceae » Poriferisocius » Poriferisocius aerobiusTs
Parent
Poriferisocius

Genomics

Accession
NCBI Assembly:GCA_028278955.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.87%
  • Contamination: 0.85%
  • Quality: 90.62
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 80.0%)
  • 1 23S rRNA (up to 67.0%)
  • tRNAs for 19 amino acids
Sequencing depth
24.0 ×
Source
Other features
  • G+C Content: 66.68%
  • Coding Density: 92.33%
  • Codon Table: 11
  • N50: 15,477 bp
  • Contigs: 225
  • Largest Contig: 53,800bp
  • Assembly Length: 2,477,953 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were assessed with CheckM v1.1.0 using a lineage-specific workflow.

The 16S rRNA gene sequence did not fully assemble using the automated assembler, but the two contigs in the MAG can be manually or with CAP4 overlapped with 56 bp. The individual sequences are: 
>2784506828 16S rRNA. Bacterial SSU [Unclassified Actinobacteria Act4 m_cahh6 : Ga0307048_1014] (+)strand
AAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCA
TGTTGCTTAATTCGAGGCAACGCGAAGAACCTTACCTGGGTTTGACATGT
ACGGAAAAGCCATAGAGATATGGTGTCCTTCGGGGCCGTACACAGGTGGT
GCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAA
CGAGCGCAACCCTCGTCCTATGTTGCCAGCACGTAAAGGTGGGGACTCGT
AGGAGACCGCCGGGGTCAACTCGGAGGAAGGTGGGGACGACGTCAAGTCA
TCATGCCCCTTATATCCAGGGCTGCAAACATGCTACAATGGCCGGCACAA
CGGGCAGCGACACCGCGAGGTGGAGCGAATCCCTTAAAACCGGTCTCAGT
TCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAGTCGCTAGTAAT
CCCGGATCAGCAACGCCGGGGTGAATACGTTCCCGGGCCTTGTACACACC
GCCCGTCACACCACGAAAGTCGGCAACACCCGAAGTCAGTGGCCTAACTC
TTATGAGGGGGAGCTGCCGAAGGTGGGGTTGGCGATTGGGGTGAAGTCGT
AACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATCACCTCCTTTCT

>2784507987 16S rRNA. Bacterial SSU [Unclassified Actinobacteria Act4 m_cahh6 : Ga0307048_1119] (+)strand
TGTTAACGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCC
TAACACATGCAAGTCGAACGAGGTCGCCTTCGGGCAATGACCTAGTGGCG
AACGGGTGCGTAACACGTGAGGAACCTGCCCCGAAGACTGGGACAACCAC
GGGAAACTGTGGCTAATACCAGATGCCCTCTCCTGATCGCATGATCGGAA
GAGGAAATGCTCCGGCGCTTCGGGAGGGCCTCGCGGCCTATCAGCTTGTT
GGTGAGGTAACGGCTCACCAAGGTATCGACGGGTAGCTGGTCTGAGAGGA
CGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTGCGGGAGGCA
GCAGTGGGGAATCTTGCGCAATGGGCGAAAGCCTGACGCAGCAACGCCGC
GTGGGGGATGAAGGCTCTCGGGTTGTAAACCCCTTTCAGCAGGGACGAAA
TTGACGGTACCTGCAGAAGAAGCCCCGGCCAACTACGTGCCAGCAGCCGC
GGTGACACGTAGGGGGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGAGC
TCGTAGGCGGTTTAGTAAGTCAGATGTGAAAGGTTGGGGCTCAACCCTAA
GACTGCATCCGATACTGCTATGACTAGAGTCCGGTAGAGGAGTGTGGAAT
TCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGACGGCG
AAGGCAGCACTCTGGGCCGGCACTGACGCTCAGGAGCGAAAGCGTGGGTA
GCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGTTGGGCACT
AGGTGTGGGGCCTTATCAACGGGTTCCGTGCCGTAGCTAACGCATTAAGT
GCCCCGCCTGGGGAGTACGGCCGCAAGGCTAAAACTCAAAGGAATTGACG
GGGGCCCGCACAAGCGGCGGAGCATGTTGC
Together the form the following contig:

>16S rRNSA contig
TGTTAACGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAACACATGC
AAGTCGAACGAGGTCGCCTTCGGGCAATGACCTAGTGGCGAACGGGTGCGTAACACGTGA
GGAACCTGCCCCGAAGACTGGGACAACCACGGGAAACTGTGGCTAATACCAGATGCCCTC
TCCTGATCGCATGATCGGAAGAGGAAATGCTCCGGCGCTTCGGGAGGGCCTCGCGGCCTA
TCAGCTTGTTGGTGAGGTAACGGCTCACCAAGGTATCGACGGGTAGCTGGTCTGAGAGGA
CGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTGCGGGAGGCAGCAGTGGGGA
ATCTTGCGCAATGGGCGAAAGCCTGACGCAGCAACGCCGCGTGGGGGATGAAGGCTCTCG
GGTTGTAAACCCCTTTCAGCAGGGACGAAATTGACGGTACCTGCAGAAGAAGCCCCGGCC
AACTACGTGCCAGCAGCCGCGGTGACACGTAGGGGGCGAGCGTTGTCCGGAATTATTGGG
CGTAAAGAGCTCGTAGGCGGTTTAGTAAGTCAGATGTGAAAGGTTGGGGCTCAACCCTAA
GACTGCATCCGATACTGCTATGACTAGAGTCCGGTAGAGGAGTGTGGAATTCCTGGTGTA
GCGGTGAAATGCGCAGATATCAGGAGGAACACCGACGGCGAAGGCAGCACTCTGGGCCGG
CACTGACGCTCAGGAGCGAAAGCGTGGGTAGCAAACAGGATTAGATACCCTGGTAGTCCA
CGCCGTAAACGTTGGGCACTAGGTGTGGGGCCTTATCAACGGGTTCCGTGCCGTAGCTAA
CGCATTAAGTGCCCCGCCTGGGGAGTACGGCCGCAAGGCTAAAACTCAAAGGAATTGACG
GGGGCCCGCACAAGCGGCGGAGCATGTTGCTTAATTCGAGGCAACGCGAAGAACCTTACC
TGGGTTTGACATGTACGGAAAAGCCATAGAGATATGGTGTCCTTCGGGGCCGTACACAGG
TGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCG
CAACCCTCGTCCTATGTTGCCAGCACGTAAAGGTGGGGACTCGTAGGAGACCGCCGGGGT
CAACTCGGAGGAAGGTGGGGACGACGTCAAGTCATCATGCCCCTTATATCCAGGGCTGCA
AACATGCTACAATGGCCGGCACAACGGGCAGCGACACCGCGAGGTGGAGCGAATCCCTTA
AAACCGGTCTCAGTTCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAGTCGCTAG
TAATCCCGGATCAGCAACGCCGGGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGT
CACACCACGAAAGTCGGCAACACCCGAAGTCAGTGGCCTAACTCTTATGAGGGGGAGCTG
CCGAAGGTGGGGTTGGCGATTGGGGTGAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGC
GGCTGGATCACCTCCTTTCT

This contig is not in the Genbank file, but represent the full-length 16S rRNA gene sequence.
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Thomas, Torsten over 1 year ago
Submitted by
Thomas, Torsten 6 months ago
Curators
Endorsed by
Palmer, Marike 6 months ago
Validated by
Palmer, Marike 6 months ago

Publications
1

Citation Title
Nguyen et al., 2023, Systematic and Applied Microbiology Identification, classification, and functional characterization of novel sponge-associated acidimicrobiial species
Proposed this name



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