Poriferisocius aerobius^Ts

Citation

Formal styling

Poriferisocius aerobius^Ts Nguyen et al., 2023

Effective publication

Nguyen et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:v1sky3wb (validated)

Cannonical URL

https://seqco.de/i:23658

Nomenclature

Rank

Species

Syllabication

ae.ro'bi.us

Etymology

Gr. masc. n. aer, air; Gr. masc. n. bios, life; N.L. masc. adj. aerobius, one who lives with air

Nomenclatural type

NCBI Assembly: GCA_028278955.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Symbiont found to be enriched in sponge microbiomes, and no other environments. 

Classification

Bacteria » Actinomycetota » Acidimicrobiia » Acidimicrobiales » Hopanoidiivorantaceae » Poriferisocius » Poriferisocius aerobius^Ts

Parent

Poriferisocius

Genomics

Accession

NCBI Assembly:GCA_028278955.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.87%
• Contamination: 0.85%
• Quality: 90.62

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 80.0%)
• 1 23S rRNA (up to 67.0%)
• tRNAs for 19 amino acids

Sequencing depth

24.0 ×

Source

• BioSample: SAMN31047471

Other features

• G+C Content: 66.68%
• Coding Density: 92.33%
• Codon Table: 11
• N50: 15,477 bp
• Contigs: 225
• Largest Contig: 53,800 bp
• Assembly Length: 2,477,953 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination were assessed with CheckM v1.1.0 using a lineage-specific workflow.

The 16S rRNA gene sequence did not fully assemble using the automated assembler, but the two contigs in the MAG can be manually or with CAP4 overlapped with 56 bp. The individual sequences are: 

>2784506828 16S rRNA. Bacterial SSU [Unclassified Actinobacteria Act4 m_cahh6 : Ga0307048_1014] (+)strand
AAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCA
TGTTGCTTAATTCGAGGCAACGCGAAGAACCTTACCTGGGTTTGACATGT
ACGGAAAAGCCATAGAGATATGGTGTCCTTCGGGGCCGTACACAGGTGGT
GCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAA
CGAGCGCAACCCTCGTCCTATGTTGCCAGCACGTAAAGGTGGGGACTCGT
AGGAGACCGCCGGGGTCAACTCGGAGGAAGGTGGGGACGACGTCAAGTCA
TCATGCCCCTTATATCCAGGGCTGCAAACATGCTACAATGGCCGGCACAA
CGGGCAGCGACACCGCGAGGTGGAGCGAATCCCTTAAAACCGGTCTCAGT
TCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAGTCGCTAGTAAT
CCCGGATCAGCAACGCCGGGGTGAATACGTTCCCGGGCCTTGTACACACC
GCCCGTCACACCACGAAAGTCGGCAACACCCGAAGTCAGTGGCCTAACTC
TTATGAGGGGGAGCTGCCGAAGGTGGGGTTGGCGATTGGGGTGAAGTCGT
AACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATCACCTCCTTTCT

>2784507987 16S rRNA. Bacterial SSU [Unclassified Actinobacteria Act4 m_cahh6 : Ga0307048_1119] (+)strand
TGTTAACGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCC
TAACACATGCAAGTCGAACGAGGTCGCCTTCGGGCAATGACCTAGTGGCG
AACGGGTGCGTAACACGTGAGGAACCTGCCCCGAAGACTGGGACAACCAC
GGGAAACTGTGGCTAATACCAGATGCCCTCTCCTGATCGCATGATCGGAA
GAGGAAATGCTCCGGCGCTTCGGGAGGGCCTCGCGGCCTATCAGCTTGTT
GGTGAGGTAACGGCTCACCAAGGTATCGACGGGTAGCTGGTCTGAGAGGA
CGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTGCGGGAGGCA
GCAGTGGGGAATCTTGCGCAATGGGCGAAAGCCTGACGCAGCAACGCCGC
GTGGGGGATGAAGGCTCTCGGGTTGTAAACCCCTTTCAGCAGGGACGAAA
TTGACGGTACCTGCAGAAGAAGCCCCGGCCAACTACGTGCCAGCAGCCGC
GGTGACACGTAGGGGGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGAGC
TCGTAGGCGGTTTAGTAAGTCAGATGTGAAAGGTTGGGGCTCAACCCTAA
GACTGCATCCGATACTGCTATGACTAGAGTCCGGTAGAGGAGTGTGGAAT
TCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGACGGCG
AAGGCAGCACTCTGGGCCGGCACTGACGCTCAGGAGCGAAAGCGTGGGTA
GCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGTTGGGCACT
AGGTGTGGGGCCTTATCAACGGGTTCCGTGCCGTAGCTAACGCATTAAGT
GCCCCGCCTGGGGAGTACGGCCGCAAGGCTAAAACTCAAAGGAATTGACG
GGGGCCCGCACAAGCGGCGGAGCATGTTGC

Together the form the following contig:

>16S rRNSA contig
TGTTAACGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAACACATGC
AAGTCGAACGAGGTCGCCTTCGGGCAATGACCTAGTGGCGAACGGGTGCGTAACACGTGA
GGAACCTGCCCCGAAGACTGGGACAACCACGGGAAACTGTGGCTAATACCAGATGCCCTC
TCCTGATCGCATGATCGGAAGAGGAAATGCTCCGGCGCTTCGGGAGGGCCTCGCGGCCTA
TCAGCTTGTTGGTGAGGTAACGGCTCACCAAGGTATCGACGGGTAGCTGGTCTGAGAGGA
CGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTGCGGGAGGCAGCAGTGGGGA
ATCTTGCGCAATGGGCGAAAGCCTGACGCAGCAACGCCGCGTGGGGGATGAAGGCTCTCG
GGTTGTAAACCCCTTTCAGCAGGGACGAAATTGACGGTACCTGCAGAAGAAGCCCCGGCC
AACTACGTGCCAGCAGCCGCGGTGACACGTAGGGGGCGAGCGTTGTCCGGAATTATTGGG
CGTAAAGAGCTCGTAGGCGGTTTAGTAAGTCAGATGTGAAAGGTTGGGGCTCAACCCTAA
GACTGCATCCGATACTGCTATGACTAGAGTCCGGTAGAGGAGTGTGGAATTCCTGGTGTA
GCGGTGAAATGCGCAGATATCAGGAGGAACACCGACGGCGAAGGCAGCACTCTGGGCCGG
CACTGACGCTCAGGAGCGAAAGCGTGGGTAGCAAACAGGATTAGATACCCTGGTAGTCCA
CGCCGTAAACGTTGGGCACTAGGTGTGGGGCCTTATCAACGGGTTCCGTGCCGTAGCTAA
CGCATTAAGTGCCCCGCCTGGGGAGTACGGCCGCAAGGCTAAAACTCAAAGGAATTGACG
GGGGCCCGCACAAGCGGCGGAGCATGTTGCTTAATTCGAGGCAACGCGAAGAACCTTACC
TGGGTTTGACATGTACGGAAAAGCCATAGAGATATGGTGTCCTTCGGGGCCGTACACAGG
TGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCG
CAACCCTCGTCCTATGTTGCCAGCACGTAAAGGTGGGGACTCGTAGGAGACCGCCGGGGT
CAACTCGGAGGAAGGTGGGGACGACGTCAAGTCATCATGCCCCTTATATCCAGGGCTGCA
AACATGCTACAATGGCCGGCACAACGGGCAGCGACACCGCGAGGTGGAGCGAATCCCTTA
AAACCGGTCTCAGTTCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGGAGTCGCTAG
TAATCCCGGATCAGCAACGCCGGGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGT
CACACCACGAAAGTCGGCAACACCCGAAGTCAGTGGCCTAACTCTTATGAGGGGGAGCTG
CCGAAGGTGGGGTTGGCGATTGGGGTGAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGC
GGCTGGATCACCTCCTTTCT

This contig is not in the Genbank file, but represent the full-length 16S rRNA gene sequence.

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Genome: GCA_028278955.1
• Global Biodiversity Information Facility (GBIF)

Search sequences

• NCBI Nucleotide

Local history

• This name was last modified 8 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Thomas, Torsten over 1 year ago

Submitted by

Thomas, Torsten 8 months ago

Curators

• Rodriguez-R, Luis M
• Palmer, Marike

Endorsed by

Palmer, Marike 8 months ago

Validated by

Palmer, Marike 8 months ago