Genome sc|0000082

Genomics

Accession

NCBI Assembly:GCA_003568775.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.0%
• Quality: 100.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

86.68 ×

Source

• BioSample: SAMN06250747

Other features

• G+C Content: 32.2%
• Coding Density: 93.52%
• Codon Table: 11
• N50: 111,948 bp
• Contigs: 9
• Largest Contig: 193,791 bp
• Assembly Length: 575,637 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

The Prokaryotic Genome Annotation Pipeline (PGAP) was used to identify tRNA and rRNA genes. Completion and contamination were estimated by CheckM. Although analysis with CheckM suggested low completeness, this was likely due to the reduced genome size typical of Nanoarchaeota. The program identified 120-121 archaeal marker genes, which is very similar to the number of marker genes (118-119) identified in the complete genomes of two other Nanoarchaeota, Cand. Nanopusillus acidilobi and Nanoarchaeum equitans (see St. John et al., 2019). For this reason, completion is estimated at 100%.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2015-04

Location

Lat Lon: 38.0654 S 176.3595 E

Toponym

Geo Loc Name: New Zealand: Tikitere, geothermal spring

Environment

Env Material: water and sediment

Sample Type: metagenomic assembly

Env Biome: geothermal spring

Isolation Source: 5 single cells from different organisms amplified by MDA; water and sediment from hot spring

Other

Host: Desulfurococcales

Ph: 6.48

Depth: 5

Temp: 78.5 C

Rel To Oxygen: anaerobe

Package

Ncbi Submission Package: MIGS.ba.sediment.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.sediment

All retrieved samples

• SAMN06250747: MIGS Cultured Bacterial/Archaeal sample from Candidatus Nanoclepta minutus

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Metadata retrieved 4 months ago