Allen, Eric E.


Publications
5

A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes

Citation
Podell et al. (2020). Microbiome 8 (1)
Names
“Methylospongiales”
Abstract
Abstract Background Marine sponges and their microbiomes contribute significantly to carbon and nutrient cycling in global reefs, processing and remineralizing dissolved and particulate organic matter. Lamellodysidea herbacea sponges obtain additional energy from abundant photosynthetic Hormoscilla cyanobacterial symbionts, which also produce polybrominated diphenyl ethers (PBDEs) chemically similar to anthropogenic pollutants of environmental concern. Potential contributions of non-Hormoscilla

Draft Genome Sequence of “ Candidatus Halobonum tyrrellensis” Strain G22, Isolated from the Hypersaline Waters of Lake Tyrrell, Australia

Citation
Ugalde et al. (2013). Genome Announcements 1 (6)
Names
Ca. Halobonum tyrrellensis
Abstract
ABSTRACT We report the draft 3.675-Mbp genome sequence of “ Candidatus Halobonum tyrrellensis” strain G22, a novel halophilic archaeon isolated from the surface hypersaline waters of Lake Tyrrell, Australia. The availability of the first genome from the “ Candidatus Halobonum” genus provides a new genomic resource for the comparative genomic analysis of halophilic Archaea .

Genome Sequence of “ Candidatus Nitrosopumilus salaria” BD31, an Ammonia-Oxidizing Archaeon from the San Francisco Bay Estuary

Citation
Mosier et al. (2012). Journal of Bacteriology 194 (8)
Names
Ca. Nitrosopumilus salaria
Abstract
ABSTRACT Ammonia-oxidizing archaea (AOA) play important roles in nitrogen and carbon cycling in marine and terrestrial ecosystems. Here, we present the draft genome sequence for the ammonia-oxidizing archaeon “ Candidatus Nitrosopumilus salaria” BD31, which was enriched in culture from sediments of the San Francisco Bay estuary. The genome sequences revealed many similarities to the genome of Nitrosopumilus maritimus .

Genome Sequence of “ Candidatus Nitrosoarchaeum limnia” BG20, a Low-Salinity Ammonia-Oxidizing Archaeon from the San Francisco Bay Estuary

Citation
Mosier et al. (2012). Journal of Bacteriology 194 (8)
Names
Ca. Nitrosoarchaeum limnia
Abstract
ABSTRACT Here, we present the draft genome sequence of “ Candidatus Nitrosoarchaeum limnia” BG20, an ammonia-oxidizing archaeon enriched in culture from low-salinity sediments of the San Francisco Bay estuary. The genome sequence revealed many similarities to the previously sequenced genome of “ Ca. Nitrosoarchaeum limnia” SFB1 (enriched from a nearby site in San Francisco Bay) and is representative of a clade of ammonia-oxid