AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 9-1
medoid: GCF 003347605 1
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AAI clade 9-1-1
medoid: GCF 900143185 1
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AAI clade 9-1-2
medoid: GCF 003860565 1
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AAI clade 9-1-3
medoid: GCF 015191005 1
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AAI clade 9-1-4
medoid: GCA 002434285 1
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AAI clade 9-1-5
medoid: GCA 002453895 1
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AAI clade 9-1-6
medoid: GCA 002378465 1
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AAI clade 9-1-7
medoid: GCA 002383165 1
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AAI clade 9-1-8
medoid: GCF 003336205 1
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AAI clade 9-1-9
medoid: GCF 003347605 1
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AAI clade 9-1-9-1
medoid: GCA 002439165 1
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AAI clade 9-1-9-2
medoid: GCA 016025055 1
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AAI clade 9-1-9-3
medoid: GCA 019203745 1
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AAI clade 9-1-9-4
medoid: GCF 001021975 1
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AAI clade 9-1-9-5
medoid: GCF 001045455 1
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AAI clade 9-1-9-6
medoid: GCF 003347605 1
5 datasets: GCF 001593385 1 (AAI: 97.44%), GCF 002025665 1 (AAI: 96.94%), GCF 003347605 1 (AAI: 100.0%), GCF 004916905 1 (AAI: 95.75%), and GCF 016775705 1 (AAI: 96.44%)
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AAI clade 9-1-9-7
medoid: GCF 002835665 1
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AAI clade 9-1-9-8
medoid: GCF 002899945 2
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AAI clade 9-1-9-9
medoid: GCF 003663845 1
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AAI clade 9-1-9-10
medoid: GCF 002979755 1
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AAI clade 9-1-9-11
medoid: GCF 003384725 1
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AAI clade 9-1-9-12
medoid: GCF 003385455 1
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AAI clade 9-1-9-13
medoid: GCF 003385595 1
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AAI clade 9-1-9-14
medoid: GCF 003614945 1
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AAI clade 9-1-9-15
medoid: GCF 003729935 1
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AAI clade 9-1-9-16
medoid: GCF 003971235 1
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AAI clade 9-1-9-17
medoid: GCF 004119445 1
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AAI clade 9-1-9-18
medoid: GCF 900636535 1
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AAI clade 9-1-9-19
medoid: GCF 903969135 1
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AAI clade 9-1-9-20
medoid: GCF 008386505 1
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AAI clade 9-1-9-21
medoid: GCF 011752975 1
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AAI clade 9-1-9-22
medoid: GCF 014204415 1
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AAI clade 9-1-9-23
medoid: GCF 900141665 1
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AAI clade 9-1-9-1
medoid: GCA 002439165 1
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AAI clade 9-1-10
medoid: GCF 900078205 2
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AAI clade 9-1-11
medoid: GCF 009670965 1
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AAI clade 9-1-12
medoid: GCF 001675285 1
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AAI clade 9-1-13
medoid: GCF 000265465 1
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AAI clade 9-1-14
medoid: GCF 900110605 1
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AAI clade 9-1-15
medoid: GCF 003815655 1
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AAI clade 9-1-16
medoid: GCF 900115055 1
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AAI clade 9-1-17
medoid: GCF 011082725 1
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AAI clade 9-1-1
medoid: GCF 900143185 1
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AAI clade 9-2
medoid: GCA 003247185 1
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AAI clade 9-3
medoid: GCA 007134085 1
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AAI clade 9-4
medoid: GCF 002933815 1
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AAI clade 9-5
medoid: GCF 014352875 1
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AAI clade 9-6
medoid: GCF 009754945 1
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AAI clade 9-7
medoid: GCF 002886045 1
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AAI clade 9-8
medoid: GCA 017983975 1
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AAI clade 9-9
medoid: GCA 002715485 1
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AAI clade 9-10
medoid: GCA 002699205 1
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AAI clade 9-11
medoid: GCF 003014695 1
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AAI clade 9-12
medoid: GCA 902594485 1
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AAI clade 9-13
medoid: GCA 016777965 1
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AAI clade 9-14
medoid: GCF 007655305 1
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AAI clade 9-15
medoid: GCA 903887845 1
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AAI clade 9-16
medoid: GCA 016222975 1
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AAI clade 9-17
medoid: GCA 016786885 1
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AAI clade 9-18
medoid: GCA 017303795 1
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AAI clade 9-19
medoid: GCF 015351595 1
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AAI clade 9-20
medoid: GCA 002389765 1
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AAI clade 9-21
medoid: GCA 013214355 1
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AAI clade 9-22
medoid: GCF 011089895 1
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AAI clade 9-23
medoid: GCA 013391385 1
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AAI clade 9-24
medoid: GCF 018613605 1
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AAI clade 9-25
medoid: GCA 016708845 1
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AAI clade 9-26
medoid: GCF 900156415 1
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AAI clade 9-27
medoid: GCF 004349195 1
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AAI clade 9-28
medoid: GCF 012516355 1
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AAI clade 9-29
medoid: GCF 000520975 1
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AAI clade 9-30
medoid: GCA 016712535 1
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AAI clade 9-31
medoid: GCF 003944715 1
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AAI clade 9-32
medoid: GCF 014251635 1
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AAI clade 9-1
medoid: GCF 003347605 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1