AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: GCA 017502845 1
• AAI clade 2 medoid: GCA 002434265 1
• AAI clade 3 medoid: GCA 013002175 1
• AAI clade 4 medoid: GCA 900110395 1
• AAI clade 5 medoid: GCA 012798955 1
• AAI clade 6 medoid: GCA 013415575 1
• AAI clade 7 medoid: GCF 008638345 1
• AAI clade 8 medoid: GCF 000807255 1
• AAI clade 9 medoid: GCF 001050135 1
• AAI clade 10 medoid: GCA 002717245 1
• AAI clade 11 medoid: GCA 017478625 1
• AAI clade 12 medoid: GCA 009773355 1
• AAI clade 13 medoid: GCA 905200435 1
• AAI clade 14 medoid: GCA 017516885 1
• AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 15-1 medoid: GCA 001872265 1
  • AAI clade 15-2 medoid: GCA 018896595 1
  • AAI clade 15-3 medoid: GCA 001787205 1
  • AAI clade 15-4 medoid: GCA 016206085 1
    • AAI clade 15-4-1 medoid: GCA 016214105 1
    • AAI clade 15-4-2 medoid: GCA 018819405 1
    • AAI clade 15-4-3 medoid: GCA 001784435 1
    • AAI clade 15-4-4 medoid: GCA 016188495 1
    • AAI clade 15-4-5 medoid: GCA 000996355 1
    • AAI clade 15-4-6 medoid: GCA 018698735 1
    • AAI clade 15-4-7 medoid: GCA 001790815 1
    • AAI clade 15-4-8 medoid: GCA 001001925 1
    • AAI clade 15-4-9 medoid: GCA 001002285 1
    • AAI clade 15-4-10 medoid: GCA 016188475 1
    • AAI clade 15-4-11 medoid: GCA 001003705 1
    • AAI clade 15-4-12 medoid: GCA 001782805 1
    • AAI clade 15-4-13 medoid: GCA 001791745 1
    • AAI clade 15-4-14 medoid: GCA 001771185 1
    • AAI clade 15-4-15 medoid: GCA 001773455 1
    • AAI clade 15-4-16 medoid: GCA 001774555 1
    • AAI clade 15-4-17 medoid: GCA 001776195 1
    • AAI clade 15-4-18 medoid: GCA 001777515 1
    • AAI clade 15-4-19 medoid: GCA 001777655 1
    • AAI clade 15-4-20 medoid: GCA 001777585 1
    • AAI clade 15-4-21 medoid: GCA 001779955 1
    • AAI clade 15-4-22 medoid: GCA 001782825 1
    • AAI clade 15-4-23 medoid: GCA 001782975 1
    • AAI clade 15-4-24 medoid: GCA 016234265 1
    • AAI clade 15-4-25 medoid: GCA 003514455 1
    • AAI clade 15-4-26 medoid: GCA 016182085 1
      4 datasets: GCA 001783215 1 (AAI: 63.47%), GCA 004321885 1 (AAI: 49.72%), GCA 007376295 1 (AAI: 57.43%), and GCA 016182085 1 (AAI: 100.0%)
    • AAI clade 15-4-27 medoid: GCA 002773185 1
    • AAI clade 15-4-28 medoid: GCA 018650085 1
    • AAI clade 15-4-29 medoid: GCA 018652595 1
    • AAI clade 15-4-30 medoid: GCA 002774875 1
    • AAI clade 15-4-31 medoid: GCA 001791045 1
    • AAI clade 15-4-32 medoid: GCA 001791115 1
    • AAI clade 15-4-33 medoid: GCA 003576745 1
    • AAI clade 15-4-34 medoid: GCA 001791715 1
    • AAI clade 15-4-35 medoid: GCA 001791425 1
    • AAI clade 15-4-36 medoid: GCA 001791465 1
    • AAI clade 15-4-37 medoid: GCA 016844925 1
    • AAI clade 15-4-38 medoid: GCA 001791645 1
    • AAI clade 15-4-39 medoid: GCA 001817115 1
    • AAI clade 15-4-40 medoid: GCA 016182555 1
    • AAI clade 15-4-41 medoid: GCA 001818365 1
    • AAI clade 15-4-42 medoid: GCA 001871445 1
    • AAI clade 15-4-43 medoid: GCA 001889965 1
    • AAI clade 15-4-44 medoid: GCA 018830085 1
    • AAI clade 15-4-45 medoid: GCA 002293685 1
    • AAI clade 15-4-46 medoid: GCA 018646705 1
    • AAI clade 15-4-47 medoid: GCA 002686445 1
    • AAI clade 15-4-48 medoid: GCA 002688135 1
    • AAI clade 15-4-49 medoid: GCA 002716765 1
    • AAI clade 15-4-50 medoid: GCA 903853785 1
    • AAI clade 15-4-51 medoid: GCA 003453595 1
    • AAI clade 15-4-52 medoid: GCA 016699205 1
    • AAI clade 15-4-53 medoid: GCA 004298405 1
    • AAI clade 15-4-54 medoid: GCA 903913365 1
    • AAI clade 15-4-55 medoid: GCA 016222815 1
    • AAI clade 15-4-56 medoid: GCA 003497135 1
    • AAI clade 15-4-57 medoid: GCA 003501255 1
    • AAI clade 15-4-58 medoid: GCA 003505155 1
    • AAI clade 15-4-59 medoid: GCA 016207285 1
    • AAI clade 15-4-60 medoid: GCA 903848275 1
    • AAI clade 15-4-61 medoid: GCA 003597955 1
    • AAI clade 15-4-62 medoid: GCA 004297205 1
    • AAI clade 15-4-63 medoid: GCA 016204585 1
    • AAI clade 15-4-64 medoid: GCA 007376135 1
    • AAI clade 15-4-65 medoid: GCA 016866635 1
    • AAI clade 15-4-66 medoid: GCA 012797935 1
    • AAI clade 15-4-67 medoid: GCA 018701105 1
    • AAI clade 15-4-68 medoid: GCA 015485755 1
    • AAI clade 15-4-69 medoid: GCA 015661005 1
    • AAI clade 15-4-70 medoid: GCA 016182915 1
    • AAI clade 15-4-71 medoid: GCA 016188355 1
    • AAI clade 15-4-72 medoid: GCA 016192205 1
    • AAI clade 15-4-73 medoid: GCA 016217865 1
    • AAI clade 15-4-74 medoid: GCA 016203535 1
    • AAI clade 15-4-75 medoid: GCA 016203935 1
    • AAI clade 15-4-76 medoid: GCA 016205975 1
    • AAI clade 15-4-77 medoid: GCA 016206175 1
    • AAI clade 15-4-78 medoid: GCA 016206155 1
    • AAI clade 15-4-79 medoid: GCA 016206165 1
    • AAI clade 15-4-80 medoid: GCA 016213365 1
    • AAI clade 15-4-81 medoid: GCA 016214565 1
    • AAI clade 15-4-82 medoid: GCA 016215325 1
    • AAI clade 15-4-83 medoid: GCA 016217875 1
    • AAI clade 15-4-84 medoid: GCA 018818205 1
    • AAI clade 15-4-85 medoid: GCA 018824325 1
    • AAI clade 15-4-86 medoid: GCA 903870305 1
    • AAI clade 15-4-87 medoid: GCA 903954185 1
  • AAI clade 15-5 medoid: GCA 001001115 1
  • AAI clade 15-6 medoid: GCA 903837175 1
  • AAI clade 15-7 medoid: GCA 016178535 1
  • AAI clade 15-8 medoid: GCA 003170325 1
  • AAI clade 15-9 medoid: GCA 016217925 1
  • AAI clade 15-10 medoid: GCA 018968865 1
• AAI clade 16 medoid: GCA 905236305 1
• AAI clade 17 medoid: GCA 017648525 1
• AAI clade 18 medoid: GCA 019113065 1
• AAI clade 19 medoid: GCA 016795075 1
• AAI clade 20 medoid: GCF 001467025 1
• AAI clade 21 medoid: GCA 017642855 1
• AAI clade 22 medoid: GCA 017408305 1
• AAI clade 23 medoid: GCA 002436405 1