AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: GCA 017502845 1
  • AAI clade 2 medoid: GCA 002434265 1
  • AAI clade 3 medoid: GCA 013002175 1
  • AAI clade 4 medoid: GCA 900110395 1
  • AAI clade 5 medoid: GCA 012798955 1
  • AAI clade 6 medoid: GCA 013415575 1
  • AAI clade 7 medoid: GCF 008638345 1
  • AAI clade 8 medoid: GCF 000807255 1
  • AAI clade 9 medoid: GCF 001050135 1
  • AAI clade 10 medoid: GCA 002717245 1
  • AAI clade 11 medoid: GCA 017478625 1
  • AAI clade 12 medoid: GCA 009773355 1
  • AAI clade 13 medoid: GCA 905200435 1
  • AAI clade 14 medoid: GCA 017516885 1
    • AAI clade 14-1 medoid: GCA 015060735 1
    • AAI clade 14-2 medoid: GCA 017424405 1
    • AAI clade 14-3 medoid: GCA 017555585 1
      • AAI clade 14-3-1 medoid: GCA 017555585 1
        • AAI clade 14-3-1-1 medoid: GCA 905233405 1
        • AAI clade 14-3-1-2 medoid: GCA 002373755 1
        • AAI clade 14-3-1-3 medoid: GCA 017555585 1
          • AAI clade 14-3-1-3-1 medoid: GCA 017555585 1
            • AAI clade 14-3-1-3-1-1 medoid: GCA 003241175 1
            • AAI clade 14-3-1-3-1-2 medoid: GCA 017936265 1
              6 datasets: GCA 015060965 1 (AAI: 77.51%), GCA 017398805 1 (AAI: 77.8%), GCA 017408685 1 (AAI: 76.21%), GCA 017516885 1 (AAI: 69.59%), GCA 017536695 1 (AAI: 94.91%), and GCA 017936265 1 (AAI: 100.0%)
            • AAI clade 14-3-1-3-1-3 medoid: GCA 017555585 1
            • AAI clade 14-3-1-3-1-4 medoid: GCA 017553255 1
          • AAI clade 14-3-1-3-2 medoid: GCA 900542765 1
          • AAI clade 14-3-1-3-3 medoid: GCA 017938245 1
        • AAI clade 14-3-1-4 medoid: GCA 015060835 1
        • AAI clade 14-3-1-5 medoid: GCA 017536765 1
        • AAI clade 14-3-1-6 medoid: GCA 900769465 1
        • AAI clade 14-3-1-7 medoid: GCA 017428115 1
      • AAI clade 14-3-2 medoid: GCA 900321005 1
      • AAI clade 14-3-3 medoid: GCA 902782245 1
      • AAI clade 14-3-4 medoid: GCA 017428285 1
  • AAI clade 15 medoid: GCA 004321885 1
  • AAI clade 16 medoid: GCA 905236305 1
  • AAI clade 17 medoid: GCA 017648525 1
  • AAI clade 18 medoid: GCA 019113065 1
  • AAI clade 19 medoid: GCA 016795075 1
  • AAI clade 20 medoid: GCF 001467025 1
  • AAI clade 21 medoid: GCA 017642855 1
  • AAI clade 22 medoid: GCA 017408305 1
  • AAI clade 23 medoid: GCA 002436405 1