AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 14-1
medoid: GCA 015060735 1
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AAI clade 14-2
medoid: GCA 017424405 1
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AAI clade 14-3
medoid: GCA 017555585 1
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AAI clade 14-3-1
medoid: GCA 017555585 1
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AAI clade 14-3-1-1
medoid: GCA 905233405 1
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AAI clade 14-3-1-2
medoid: GCA 002373755 1
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AAI clade 14-3-1-3
medoid: GCA 017555585 1
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AAI clade 14-3-1-4
medoid: GCA 015060835 1
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AAI clade 14-3-1-5
medoid: GCA 017536765 1
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AAI clade 14-3-1-6
medoid: GCA 900769465 1
8 datasets: GCA 017381475 1 (AAI: 72.27%), GCA 017383665 1 (AAI: 74.35%), GCA 017536325 1 (AAI: 65.41%), GCA 017546505 1 (AAI: 78.83%), GCA 017555845 1 (AAI: 83.82%), GCA 017646665 1 (AAI: 78.43%), GCA 900769465 1 (AAI: 100.0%), and GCA 900770665 1 (AAI: 79.73%)
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AAI clade 14-3-1-7
medoid: GCA 017428115 1
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AAI clade 14-3-1-1
medoid: GCA 905233405 1
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AAI clade 14-3-2
medoid: GCA 900321005 1
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AAI clade 14-3-3
medoid: GCA 902782245 1
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AAI clade 14-3-4
medoid: GCA 017428285 1
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AAI clade 14-3-1
medoid: GCA 017555585 1
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AAI clade 14-1
medoid: GCA 015060735 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1