AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: GCA 017502845 1
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AAI clade 1-1
medoid: GCA 900546775 1
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AAI clade 1-2
medoid: GCA 905221215 1
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AAI clade 1-3
medoid: GCF 015326965 1
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AAI clade 1-4
medoid: GCF 900094905 1
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AAI clade 1-5
medoid: GCF 008764295 1
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AAI clade 1-6
medoid: GCA 900551895 1
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AAI clade 1-7
medoid: GCF 009193305 1
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AAI clade 1-8
medoid: GCA 017503135 1
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AAI clade 1-9
medoid: GCA 900552565 1
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AAI clade 1-10
medoid: GCA 017411305 1
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AAI clade 1-11
medoid: GCF 001465345 1
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AAI clade 1-12
medoid: GCA 900759455 1
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AAI clade 1-13
medoid: GCF 015207245 1
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AAI clade 1-14
medoid: GCA 017960805 1
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AAI clade 1-14-1
medoid: GCA 017960805 1
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AAI clade 1-14-1-1
medoid: GCA 017960805 1
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AAI clade 1-14-1-1-1
medoid: GCA 009392675 1
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AAI clade 1-14-1-1-2
medoid: GCA 017960805 1
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AAI clade 1-14-1-1-2-1
medoid: GCA 000980705 1
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AAI clade 1-14-1-1-2-2
medoid: GCA 017960805 1
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AAI clade 1-14-1-1-2-2-1
medoid: GCA 017960805 1
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AAI clade 1-14-1-1-2-2-1-1
medoid: GCA 000995065 1
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AAI clade 1-14-1-1-2-2-1-2
medoid: GCA 001029735 1
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AAI clade 1-14-1-1-2-2-1-3
medoid: GCA 001872305 1
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AAI clade 1-14-1-1-2-2-1-4
medoid: GCA 903932805 1
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AAI clade 1-14-1-1-2-2-1-5
medoid: GCA 902362965 1
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AAI clade 1-14-1-1-2-2-1-6
medoid: GCA 018715465 1
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AAI clade 1-14-1-1-2-2-1-7
medoid: GCA 002338125 1
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AAI clade 1-14-1-1-2-2-1-8
medoid: GCF 900109435 1
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AAI clade 1-14-1-1-2-2-1-8-1
medoid: GCF 900109435 1
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AAI clade 1-14-1-1-2-2-1-8-1-1
medoid: GCA 900315975 1
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AAI clade 1-14-1-1-2-2-1-8-1-2
medoid: GCF 900109435 1
6 datasets: GCA 017534835 1 (AAI: 74.46%), GCA 017542475 1 (AAI: 85.6%), GCA 017649325 1 (AAI: 87.48%), GCA 017960805 1 (AAI: 82.06%), GCF 000701945 1 (AAI: 88.83%), and GCF 900109435 1 (AAI: 100.0%)
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AAI clade 1-14-1-1-2-2-1-8-1-3
medoid: GCA 017934425 1
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AAI clade 1-14-1-1-2-2-1-8-1-4
medoid: GCF 900119535 1
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AAI clade 1-14-1-1-2-2-1-8-1-1
medoid: GCA 900315975 1
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AAI clade 1-14-1-1-2-2-1-8-2
medoid: GCA 017620025 1
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AAI clade 1-14-1-1-2-2-1-8-3
medoid: GCA 017460665 1
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AAI clade 1-14-1-1-2-2-1-8-1
medoid: GCF 900109435 1
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AAI clade 1-14-1-1-2-2-1-9
medoid: GCA 002362175 1
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AAI clade 1-14-1-1-2-2-1-10
medoid: GCA 002365855 1
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AAI clade 1-14-1-1-2-2-1-11
medoid: GCA 002366995 1
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AAI clade 1-14-1-1-2-2-1-12
medoid: GCA 015066925 1
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AAI clade 1-14-1-1-2-2-1-13
medoid: GCA 002440965 1
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AAI clade 1-14-1-1-2-2-1-14
medoid: GCA 002452855 1
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AAI clade 1-14-1-1-2-2-1-15
medoid: GCA 002719695 1
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AAI clade 1-14-1-1-2-2-1-16
medoid: GCA 018675575 1
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AAI clade 1-14-1-1-2-2-1-17
medoid: GCA 002774365 1
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AAI clade 1-14-1-1-2-2-1-18
medoid: GCF 900104615 1
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AAI clade 1-14-1-1-2-2-1-19
medoid: GCA 003554915 1
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AAI clade 1-14-1-1-2-2-1-20
medoid: GCA 003978805 1
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AAI clade 1-14-1-1-2-2-1-21
medoid: GCF 000210095 1
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AAI clade 1-14-1-1-2-2-1-22
medoid: GCA 005239585 1
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AAI clade 1-14-1-1-2-2-1-23
medoid: GCA 005791325 1
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AAI clade 1-14-1-1-2-2-1-24
medoid: GCA 005808865 1
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AAI clade 1-14-1-1-2-2-1-25
medoid: GCA 008086245 1
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AAI clade 1-14-1-1-2-2-1-26
medoid: GCA 009002475 1
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AAI clade 1-14-1-1-2-2-1-27
medoid: GCA 009692905 1
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AAI clade 1-14-1-1-2-2-1-28
medoid: GCA 017531485 1
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AAI clade 1-14-1-1-2-2-1-29
medoid: GCA 009782975 1
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AAI clade 1-14-1-1-2-2-1-30
medoid: GCA 009784335 1
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AAI clade 1-14-1-1-2-2-1-31
medoid: GCA 903825355 1
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AAI clade 1-14-1-1-2-2-1-32
medoid: GCA 013153295 1
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AAI clade 1-14-1-1-2-2-1-33
medoid: GCA 013696525 1
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AAI clade 1-14-1-1-2-2-1-34
medoid: GCA 014360495 1
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AAI clade 1-14-1-1-2-2-1-35
medoid: GCA 014799485 1
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AAI clade 1-14-1-1-2-2-1-36
medoid: GCA 017440755 1
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AAI clade 1-14-1-1-2-2-1-37
medoid: GCA 017463375 1
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AAI clade 1-14-1-1-2-2-1-38
medoid: GCA 015068565 1
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AAI clade 1-14-1-1-2-2-1-39
medoid: GCA 017531805 1
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AAI clade 1-14-1-1-2-2-1-40
medoid: GCA 015233565 1
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AAI clade 1-14-1-1-2-2-1-41
medoid: GCA 015489035 1
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AAI clade 1-14-1-1-2-2-1-42
medoid: GCA 015493225 1
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AAI clade 1-14-1-1-2-2-1-43
medoid: GCA 016188735 1
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AAI clade 1-14-1-1-2-2-1-44
medoid: GCA 016206515 1
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AAI clade 1-14-1-1-2-2-1-45
medoid: GCA 016214035 1
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AAI clade 1-14-1-1-2-2-1-46
medoid: GCA 016284035 1
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AAI clade 1-14-1-1-2-2-1-47
medoid: GCA 016699125 1
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AAI clade 1-14-1-1-2-2-1-48
medoid: GCA 017411325 1
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AAI clade 1-14-1-1-2-2-1-49
medoid: GCA 017464525 1
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AAI clade 1-14-1-1-2-2-1-50
medoid: GCA 017444345 1
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AAI clade 1-14-1-1-2-2-1-51
medoid: GCA 017445025 1
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AAI clade 1-14-1-1-2-2-1-52
medoid: GCA 902772615 1
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AAI clade 1-14-1-1-2-2-1-53
medoid: GCA 017992475 1
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AAI clade 1-14-1-1-2-2-1-54
medoid: GCA 019136435 1
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AAI clade 1-14-1-1-2-2-1-55
medoid: GCA 903859705 1
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AAI clade 1-14-1-1-2-2-1-56
medoid: GCA 900321865 1
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AAI clade 1-14-1-1-2-2-1-57
medoid: GCA 900545035 1
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AAI clade 1-14-1-1-2-2-1-58
medoid: GCA 903834195 1
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AAI clade 1-14-1-1-2-2-1-59
medoid: GCA 903871855 1
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AAI clade 1-14-1-1-2-2-1-60
medoid: GCA 903902445 1
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AAI clade 1-14-1-1-2-2-1-61
medoid: GCA 903924005 1
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AAI clade 1-14-1-1-2-2-1-1
medoid: GCA 000995065 1
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AAI clade 1-14-1-1-2-2-2
medoid: GCA 017397925 1
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AAI clade 1-14-1-1-2-2-3
medoid: GCA 017435745 1
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AAI clade 1-14-1-1-2-2-1
medoid: GCA 017960805 1
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AAI clade 1-14-1-1-2-3
medoid: GCA 018826445 1
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AAI clade 1-14-1-1-2-4
medoid: GCA 001940825 1
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AAI clade 1-14-1-1-2-5
medoid: GCF 014201655 1
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AAI clade 1-14-1-1-2-6
medoid: GCA 017560765 1
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AAI clade 1-14-1-1-2-7
medoid: GCA 902789705 1
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AAI clade 1-14-1-1-2-8
medoid: GCA 017415105 1
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AAI clade 1-14-1-1-2-9
medoid: GCA 017623475 1
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AAI clade 1-14-1-1-2-1
medoid: GCA 000980705 1
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AAI clade 1-14-1-1-3
medoid: GCA 016192645 1
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AAI clade 1-14-1-1-4
medoid: GCA 018110825 1
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AAI clade 1-14-1-1-5
medoid: GCA 003158175 1
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AAI clade 1-14-1-1-6
medoid: GCA 900768005 1
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AAI clade 1-14-1-1-1
medoid: GCA 009392675 1
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AAI clade 1-14-1-2
medoid: GCA 001940925 1
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AAI clade 1-14-1-3
medoid: GCF 900108555 1
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AAI clade 1-14-1-4
medoid: GCF 000157955 1
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AAI clade 1-14-1-5
medoid: GCA 015066975 1
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AAI clade 1-14-1-1
medoid: GCA 017960805 1
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AAI clade 1-14-2
medoid: GCA 002363155 1
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AAI clade 1-14-3
medoid: GCA 017471405 1
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AAI clade 1-14-4
medoid: GCA 902780785 1
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AAI clade 1-14-5
medoid: GCA 900541355 1
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AAI clade 1-14-1
medoid: GCA 017960805 1
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AAI clade 1-15
medoid: GCA 001604115 1
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AAI clade 1-16
medoid: GCA 900551775 1
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AAI clade 1-17
medoid: GCA 016929555 1
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AAI clade 1-18
medoid: GCF 004770145 1
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AAI clade 1-19
medoid: GCF 004745505 1
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AAI clade 1-20
medoid: GCA 900761225 1
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AAI clade 1-21
medoid: GCA 900556695 1
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AAI clade 1-22
medoid: GCA 017504995 1
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AAI clade 1-23
medoid: GCA 900550055 1
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AAI clade 1-24
medoid: GCA 017464135 1
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AAI clade 1-25
medoid: GCA 014860805 1
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AAI clade 1-1
medoid: GCA 900546775 1
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AAI clade 2
medoid: GCA 002434265 1
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AAI clade 3
medoid: GCA 013002175 1
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AAI clade 4
medoid: GCA 900110395 1
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AAI clade 5
medoid: GCA 012798955 1
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AAI clade 6
medoid: GCA 013415575 1
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AAI clade 7
medoid: GCF 008638345 1
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AAI clade 8
medoid: GCF 000807255 1
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AAI clade 9
medoid: GCF 001050135 1
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AAI clade 10
medoid: GCA 002717245 1
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AAI clade 11
medoid: GCA 017478625 1
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AAI clade 12
medoid: GCA 009773355 1
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AAI clade 13
medoid: GCA 905200435 1
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AAI clade 14
medoid: GCA 017516885 1
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AAI clade 15
medoid: GCA 004321885 1
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AAI clade 16
medoid: GCA 905236305 1
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AAI clade 17
medoid: GCA 017648525 1
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AAI clade 18
medoid: GCA 019113065 1
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AAI clade 19
medoid: GCA 016795075 1
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AAI clade 20
medoid: GCF 001467025 1
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AAI clade 21
medoid: GCA 017642855 1
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AAI clade 22
medoid: GCA 017408305 1
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AAI clade 23
medoid: GCA 002436405 1