AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: asm GCA 900155255 1
  • AAI clade 2 medoid: asm GCA 003225555 1
  • AAI clade 3 medoid: miga PS19A HMP 2012 SRS017439 bin 51
  • AAI clade 4 medoid: miga BA16A LX33 339
  • AAI clade 5 medoid: asm GCA 002344625 1
  • AAI clade 6 medoid: miga ZQ19A BG 240
  • AAI clade 7 medoid: asm GCA 003220495 1
  • AAI clade 8 medoid: asm GCA 001768045 1
  • AAI clade 9 medoid: miga ZQ19A BG 239
  • AAI clade 10 medoid: asm GCA 002508675 1
  • AAI clade 11 medoid: miga PU18A 2609459660
  • AAI clade 12 medoid: asm GCA 003662385 1
  • AAI clade 13 medoid: asm GCA 002869845 2
  • AAI clade 14 medoid: miga ZQ19A BG 334
  • AAI clade 15 medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
  • AAI clade 16 medoid: asm GCA 003218215 1
  • AAI clade 17 medoid: gb PMWP00000000
  • AAI clade 18 medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
  • AAI clade 19 medoid: miga ZQ19A BG 192
  • AAI clade 20 medoid: asm GCA 003222055 1
  • AAI clade 21 medoid: asm GCA 002304435 1
  • AAI clade 22 medoid: gb PMOA00000000
  • AAI clade 23 medoid: asm GCA 001180165 1
  • AAI clade 24 medoid: asm GCA 900155275 1
  • AAI clade 25 medoid: asm GCA 003562785 1
  • AAI clade 26 medoid: miga PS19A FengQ 2015 SID531281 bin 23
  • AAI clade 27 medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
  • AAI clade 28 medoid: miga PS19A CM madagascar A27 02 1FE bin 15
  • AAI clade 29 medoid: asm GCA 900317055 1
  • AAI clade 30 medoid: gb MERW00000000
  • AAI clade 31 medoid: miga PS19A HMP 2012 SRS011126 bin 64
  • AAI clade 32 medoid: asm GCA 002320005 1
  • AAI clade 33 medoid: asm GCA 900318825 1
  • AAI clade 34 medoid: miga BA16A 35 5E
  • AAI clade 35 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
  • AAI clade 36 medoid: asm GCA 001604115 1
  • AAI clade 37 medoid: miga SW19B 10676 0045 idba bin 101
  • AAI clade 38 medoid: miga BA16A 35 12A
  • AAI clade 39 medoid: miga SW19B 10678 0025 idba bin 69
  • AAI clade 40 medoid: asm GCA 002372655 1
  • AAI clade 41 medoid: miga ZQ19A BG 670
  • AAI clade 42 medoid: asm GCA 002732585 1
  • AAI clade 43 medoid: gb MFTG00000000
  • AAI clade 44 medoid: asm GCF 000217915 1
  • AAI clade 45 medoid: miga SW19B 10676 0006 idba bin 64
  • AAI clade 46 medoid: asm GCA 005503595 1
  • AAI clade 47 medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
  • AAI clade 48 medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
  • AAI clade 49 medoid: asm GCA 002787475 1
  • AAI clade 50 medoid: asm GCA 002411275 1
  • AAI clade 51 medoid: asm GCA 001003965 1
  • AAI clade 52 medoid: asm GCA 900315795 1
  • AAI clade 53 medoid: asm GCA 002782265 1
  • AAI clade 54 medoid: asm GCA 002506275 1
  • AAI clade 55 medoid: asm GCA 002501805 1
  • AAI clade 56 medoid: miga PS19A HMP 2012 SRS024289 bin 35
  • AAI clade 57 medoid: asm GCA 002362915 1
  • AAI clade 58 medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
  • AAI clade 59 medoid: asm GCA 002478295 1
  • AAI clade 60 medoid: miga PS19A HMP 2012 SRS019127 bin 5
  • AAI clade 61 medoid: asm GCA 002373045 1
  • AAI clade 62 medoid: gb PLQF00000000
  • AAI clade 63 medoid: asm GCA 002352835 1
  • AAI clade 64 medoid: miga PS19A FengQ 2015 SID31700 bin 66
  • AAI clade 65 medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
  • AAI clade 66 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
  • AAI clade 67 medoid: miga SW19B 10678 0003 idba bin 42
  • AAI clade 68 medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
  • AAI clade 69 medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
  • AAI clade 70 medoid: asm GCA 002369075 1
  • AAI clade 71 medoid: miga SW19B 10675 0017 idba bin 79
  • AAI clade 72 medoid: miga PS19A CM madagascar V53 02 1FE bin 36
  • AAI clade 73 medoid: miga PS19A RampelliS 2015 H1 bin 24
  • AAI clade 74 medoid: miga PS19A HMP 2012 SRS024138 bin 26
  • AAI clade 75 medoid: asm GCA 002294525 1
  • AAI clade 76 medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
  • AAI clade 77 medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
  • AAI clade 78 medoid: miga SW19B 10677 0035 idba bin 49
  • AAI clade 79 medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
  • AAI clade 80 medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
  • AAI clade 81 medoid: miga PS19A OhJ 2014 MET0095 bin 1
  • AAI clade 82 medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
  • AAI clade 83 medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
  • AAI clade 84 medoid: asm GCA 003020965 1
  • AAI clade 85 medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
  • AAI clade 86 medoid: miga PS19A HMP 2012 SRS023595 bin 63
  • AAI clade 87 medoid: asm GCA 001701225 1
  • AAI clade 88 medoid: miga SW19B 10676 0021 idba bin 107
  • AAI clade 89 medoid: miga SW19B 10678 0026 idba bin 16
  • AAI clade 90 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
    • AAI clade 90-1 medoid: asm GCA 002359465 1
    • AAI clade 90-2 medoid: miga SW19B 10675 0025 idba bin 88
    • AAI clade 90-3 medoid: miga SW19B 10675 0013 idba bin 90
    • AAI clade 90-4 medoid: miga PS19A KosticAD 2015 PRJNA231909 3112363 bin 26
    • AAI clade 90-5 medoid: asm GCA 002314555 1
    • AAI clade 90-6 medoid: asm GCA 900314795 1
    • AAI clade 90-7 medoid: miga SW19B 10674 0027 idba bin 39
    • AAI clade 90-8 medoid: miga SW19B 10677 0009 idba bin 27
    • AAI clade 90-9 medoid: asm GCA 002361965 1
    • AAI clade 90-10 medoid: asm GCA 002372375 1
    • AAI clade 90-11 medoid: miga PS19A IjazUZ 2017 S51 a WGS megahit bin 4
    • AAI clade 90-12 medoid: asm GCA 002400275 1
    • AAI clade 90-13 medoid: miga PS19A BackhedF 2015 SID615 4M bin 1
    • AAI clade 90-14 medoid: asm GCA 002397165 1
    • AAI clade 90-15 medoid: miga PS19A RaymondF 2016 P25C90 bin 36
    • AAI clade 90-16 medoid: asm GCA 002424295 1
    • AAI clade 90-17 medoid: miga PS19A LiuW 2016 SRR3993061 bin 14
    • AAI clade 90-18 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
    • AAI clade 90-19 medoid: miga PS19A ZellerG 2014 CCMD19497912ST 21 0 bin 26
    • AAI clade 90-20 medoid: miga SW19B 10675 min2k bin 1651
    • AAI clade 90-21 medoid: miga SW19B 10674 0007 idba bin 58
    • AAI clade 90-22 medoid: miga SW19B 10676 0032 idba bin 191
    • AAI clade 90-23 medoid: miga SW19B 10674 0048 idba bin 75
    • AAI clade 90-24 medoid: miga SW19B 10676 0049 idba bin 59
    • AAI clade 90-25 medoid: miga SW19B 10675 0029 idba bin 28
    • AAI clade 90-26 medoid: miga SW19B 10678 0013 idba bin 61
    • AAI clade 90-27 medoid: asm GCA 900316435 1
      • AAI clade 90-27-1 medoid: asm GCA 900316435 1
      • AAI clade 90-27-2 medoid: asm GCA 900316815 1
      • AAI clade 90-27-3 medoid: asm GCA 900317595 1
      • AAI clade 90-27-4 medoid: asm GCA 900317875 1
      • AAI clade 90-27-5 medoid: miga SW19B 10674 min2k bin 795
      • AAI clade 90-27-6 medoid: miga SW19B 10677 min2k bin 4481
      • AAI clade 90-27-7 medoid: miga SW19B 10677 0053 idba bin 138
      • AAI clade 90-27-8 medoid: miga SW19B 10677 0017 idba bin 32
      • AAI clade 90-27-9 medoid: miga SW19B 10674 0007 idba bin 79
      • AAI clade 90-27-10 medoid: miga SW19B 10678 0045 idba bin 115
      • AAI clade 90-27-11 medoid: miga SW19B 10678 0005 idba bin 53
    • AAI clade 90-28 medoid: asm GCA 900316555 1
    • AAI clade 90-29 medoid: miga SW19B 10677 0043 idba bin 154
    • AAI clade 90-30 medoid: miga SW19B 10677 0014 idba bin 192
    • AAI clade 90-31 medoid: asm GCA 900318495 1
    • AAI clade 90-32 medoid: miga SW19B 10676 min2k bin 1847
    • AAI clade 90-33 medoid: miga SW19B 10676 0020 idba bin 99
    • AAI clade 90-34 medoid: miga SW19B 10674 0024 idba bin 181
    • AAI clade 90-35 medoid: miga SW19B 10674 0014 idba bin 33
    • AAI clade 90-36 medoid: miga SW19B 10675 0043 idba bin 59
    • AAI clade 90-37 medoid: miga SW19B 10674 min2k bin 1085
    • AAI clade 90-38 medoid: miga PS19A ZeeviD 2015 PNP Main 150 megahit bin 30
    • AAI clade 90-39 medoid: miga PS19A BackhedF 2015 SID82 M bin 31
    • AAI clade 90-40 medoid: miga SW19B 10677 0018 idba bin 155
    • AAI clade 90-41 medoid: miga SW19B 10677 0027 idba bin 10
    • AAI clade 90-42 medoid: miga PS19A VogtmannE 2016 MMRS64281211ST 27 0 0 bin 40
    • AAI clade 90-43 medoid: miga PS19A HeQ 2017 SZAXPI029489 87 bin 6
    • AAI clade 90-44 medoid: miga PS19A FengQ 2015 SID31750 bin 36
    • AAI clade 90-45 medoid: miga PS19A LoombaR 2017 SID1050 bax bin 11
    • AAI clade 90-46 medoid: miga PS19A RaymondF 2016 P21E90 bin 28
    • AAI clade 90-47 medoid: miga PS19A KosticAD 2015 PRJNA231909 3109940 bin 14
    • AAI clade 90-48 medoid: miga PS19A LeChatelierE 2013 MH0153 bin 11
    • AAI clade 90-49 medoid: miga PS19A LeChatelierE 2013 MH0206 bin 81
    • AAI clade 90-50 medoid: miga PS19A CM madagascar A89 01 1FE bin 23
    • AAI clade 90-51 medoid: miga PS19A XieH 2016 YSZC12003 35549 bin 13
    • AAI clade 90-52 medoid: miga PS19A LeChatelierE 2013 MH0188 bin 16
    • AAI clade 90-53 medoid: miga PS19A LeChatelierE 2013 MH0229 bin 74
    • AAI clade 90-54 medoid: miga PS19A XieH 2016 YSZC12003 37210 bin 32
    • AAI clade 90-55 medoid: miga PS19A RaymondF 2016 P21E90 bin 59
    • AAI clade 90-56 medoid: miga PS19A VogtmannE 2016 MMRS88581325ST 27 0 0 bin 44
  • AAI clade 91 medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
  • AAI clade 92 medoid: miga SW19B 10674 0007 idba bin 173
  • AAI clade 93 medoid: miga PS19A VatanenT 2016 G80490 bin 1