AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: asm GCA 900155255 1
  • AAI clade 2 medoid: asm GCA 003225555 1
  • AAI clade 3 medoid: miga PS19A HMP 2012 SRS017439 bin 51
  • AAI clade 4 medoid: miga BA16A LX33 339
  • AAI clade 5 medoid: asm GCA 002344625 1
  • AAI clade 6 medoid: miga ZQ19A BG 240
  • AAI clade 7 medoid: asm GCA 003220495 1
  • AAI clade 8 medoid: asm GCA 001768045 1
  • AAI clade 9 medoid: miga ZQ19A BG 239
  • AAI clade 10 medoid: asm GCA 002508675 1
  • AAI clade 11 medoid: miga PU18A 2609459660
  • AAI clade 12 medoid: asm GCA 003662385 1
  • AAI clade 13 medoid: asm GCA 002869845 2
  • AAI clade 14 medoid: miga ZQ19A BG 334
  • AAI clade 15 medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
  • AAI clade 16 medoid: asm GCA 003218215 1
  • AAI clade 17 medoid: gb PMWP00000000
  • AAI clade 18 medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
  • AAI clade 19 medoid: miga ZQ19A BG 192
  • AAI clade 20 medoid: asm GCA 003222055 1
  • AAI clade 21 medoid: asm GCA 002304435 1
  • AAI clade 22 medoid: gb PMOA00000000
  • AAI clade 23 medoid: asm GCA 001180165 1
  • AAI clade 24 medoid: asm GCA 900155275 1
  • AAI clade 25 medoid: asm GCA 003562785 1
  • AAI clade 26 medoid: miga PS19A FengQ 2015 SID531281 bin 23
  • AAI clade 27 medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
  • AAI clade 28 medoid: miga PS19A CM madagascar A27 02 1FE bin 15
  • AAI clade 29 medoid: asm GCA 900317055 1
  • AAI clade 30 medoid: gb MERW00000000
  • AAI clade 31 medoid: miga PS19A HMP 2012 SRS011126 bin 64
  • AAI clade 32 medoid: asm GCA 002320005 1
  • AAI clade 33 medoid: asm GCA 900318825 1
  • AAI clade 34 medoid: miga BA16A 35 5E
  • AAI clade 35 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
  • AAI clade 36 medoid: asm GCA 001604115 1
  • AAI clade 37 medoid: miga SW19B 10676 0045 idba bin 101
  • AAI clade 38 medoid: miga BA16A 35 12A
  • AAI clade 39 medoid: miga SW19B 10678 0025 idba bin 69
  • AAI clade 40 medoid: asm GCA 002372655 1
  • AAI clade 41 medoid: miga ZQ19A BG 670
  • AAI clade 42 medoid: asm GCA 002732585 1
  • AAI clade 43 medoid: gb MFTG00000000
  • AAI clade 44 medoid: asm GCF 000217915 1
  • AAI clade 45 medoid: miga SW19B 10676 0006 idba bin 64
  • AAI clade 46 medoid: asm GCA 005503595 1
  • AAI clade 47 medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
  • AAI clade 48 medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
  • AAI clade 49 medoid: asm GCA 002787475 1
  • AAI clade 50 medoid: asm GCA 002411275 1
  • AAI clade 51 medoid: asm GCA 001003965 1
  • AAI clade 52 medoid: asm GCA 900315795 1
  • AAI clade 53 medoid: asm GCA 002782265 1
  • AAI clade 54 medoid: asm GCA 002506275 1
  • AAI clade 55 medoid: asm GCA 002501805 1
  • AAI clade 56 medoid: miga PS19A HMP 2012 SRS024289 bin 35
  • AAI clade 57 medoid: asm GCA 002362915 1
  • AAI clade 58 medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
  • AAI clade 59 medoid: asm GCA 002478295 1
  • AAI clade 60 medoid: miga PS19A HMP 2012 SRS019127 bin 5
  • AAI clade 61 medoid: asm GCA 002373045 1
  • AAI clade 62 medoid: gb PLQF00000000
  • AAI clade 63 medoid: asm GCA 002352835 1
  • AAI clade 64 medoid: miga PS19A FengQ 2015 SID31700 bin 66
  • AAI clade 65 medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
  • AAI clade 66 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
  • AAI clade 67 medoid: miga SW19B 10678 0003 idba bin 42
  • AAI clade 68 medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
  • AAI clade 69 medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
  • AAI clade 70 medoid: asm GCA 002369075 1
  • AAI clade 71 medoid: miga SW19B 10675 0017 idba bin 79
  • AAI clade 72 medoid: miga PS19A CM madagascar V53 02 1FE bin 36
  • AAI clade 73 medoid: miga PS19A RampelliS 2015 H1 bin 24
  • AAI clade 74 medoid: miga PS19A HMP 2012 SRS024138 bin 26
  • AAI clade 75 medoid: asm GCA 002294525 1
  • AAI clade 76 medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
  • AAI clade 77 medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
  • AAI clade 78 medoid: miga SW19B 10677 0035 idba bin 49
  • AAI clade 79 medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
  • AAI clade 80 medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
  • AAI clade 81 medoid: miga PS19A OhJ 2014 MET0095 bin 1
  • AAI clade 82 medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
    • AAI clade 82-1 medoid: miga SW19B 10678 min2k bin 1588
    • AAI clade 82-2 medoid: miga SW19B 10676 0026 idba bin 82
    • AAI clade 82-3 medoid: miga SW19B 10674 0009 idba bin 77
    • AAI clade 82-4 medoid: miga SW19B 10678 0008 idba bin 116
    • AAI clade 82-5 medoid: asm GCA 002450015 1
    • AAI clade 82-6 medoid: miga PS19A ZeeviD 2015 PNP Main 597 megahit bin 29
    • AAI clade 82-7 medoid: asm GCA 002477995 1
      6 datasets: asm GCA 002477995 1 (AAI: 100.0%), asm GCA 002103105 1 (AAI: 73.78%), asm GCA 002102735 1 (AAI: 94.73%), miga PS19A Bengtsson PalmeJ 2015 TRAVELRES25 bin 70 (AAI: 72.7%), miga PS19A LeChatelierE 2013 MH0434 bin 69 (AAI: 73.17%), and miga PS19A LiSS 2016 FAT 014 22 0 0 bin 37 (AAI: 69.9%)
    • AAI clade 82-8 medoid: asm GCA 002481925 1
    • AAI clade 82-9 medoid: miga SW19B 10678 0001 idba bin 77
    • AAI clade 82-10 medoid: miga PS19A ZeeviD 2015 PNP Main 560 megahit bin 22
    • AAI clade 82-11 medoid: asm GCA 002293275 1
    • AAI clade 82-12 medoid: asm GCA 001784535 1
    • AAI clade 82-13 medoid: asm GCA 001784565 1
    • AAI clade 82-14 medoid: miga PS19A BritoIL 2016 M1 16 ST bin 43
    • AAI clade 82-15 medoid: asm GCA 003258795 1
    • AAI clade 82-16 medoid: miga PS19A BritoIL 2016 M2 52 ST bin 2
    • AAI clade 82-17 medoid: miga PS19A LiJ 2014 MH0271 bin 63
    • AAI clade 82-18 medoid: miga PS19A XieH 2016 YSZC12003 35387 bin 25
    • AAI clade 82-19 medoid: miga PS19A BritoIL 2016 W1 26 ST bin 69
    • AAI clade 82-20 medoid: asm GCA 900321735 1
    • AAI clade 82-21 medoid: gb MFRQ00000000
    • AAI clade 82-22 medoid: miga SW19B 10674 0024 idba bin 137
    • AAI clade 82-23 medoid: miga SW19B 10678 0052 idba bin 62
    • AAI clade 82-24 medoid: miga SW19B 10676 0012 idba bin 101
    • AAI clade 82-25 medoid: miga PS19A LeChatelierE 2013 MH0452 bin 20
    • AAI clade 82-26 medoid: miga SW19B 10677 min2k bin 1885
    • AAI clade 82-27 medoid: miga SW19B 10677 min2k bin 2540
    • AAI clade 82-28 medoid: miga SW19B 10677 min2k bin 2918
    • AAI clade 82-29 medoid: miga SW19B 10677 min2k bin 3395
    • AAI clade 82-30 medoid: miga SW19B 10678 min2k bin 1978
    • AAI clade 82-31 medoid: miga SW19B 10675 min2k bin 2406
    • AAI clade 82-32 medoid: miga SW19B 10674 min2k bin 1968
    • AAI clade 82-33 medoid: miga SW19B 10677 min2k bin 1777
    • AAI clade 82-34 medoid: miga SW19B 10676 min2k bin 2122
    • AAI clade 82-35 medoid: miga PS19A CM madagascar A95 01 1FE bin 34
    • AAI clade 82-36 medoid: miga PS19A BackhedF 2015 SID544 M bin 16
    • AAI clade 82-37 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES40 bin 43
    • AAI clade 82-38 medoid: miga PS19A ZeeviD 2015 PNP Main 462 megahit bin 7
    • AAI clade 82-39 medoid: miga PS19A BritoIL 2016 W2 4 ST bin 48
    • AAI clade 82-40 medoid: miga PS19A BritoIL 2016 W2 44 ST bin 84
    • AAI clade 82-41 medoid: miga PS19A LiJ 2014 MH0378 bin 71
    • AAI clade 82-42 medoid: miga PS19A LeChatelierE 2013 MH0419 bin 68
    • AAI clade 82-43 medoid: miga PS19A LiJ 2014 MH0369 bin 22
    • AAI clade 82-44 medoid: miga PS19A LiJ 2014 V1 UC63 0 bin 49
  • AAI clade 83 medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
  • AAI clade 84 medoid: asm GCA 003020965 1
  • AAI clade 85 medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
  • AAI clade 86 medoid: miga PS19A HMP 2012 SRS023595 bin 63
  • AAI clade 87 medoid: asm GCA 001701225 1
  • AAI clade 88 medoid: miga SW19B 10676 0021 idba bin 107
  • AAI clade 89 medoid: miga SW19B 10678 0026 idba bin 16
  • AAI clade 90 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
  • AAI clade 91 medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
  • AAI clade 92 medoid: miga SW19B 10674 0007 idba bin 173
  • AAI clade 93 medoid: miga PS19A VatanenT 2016 G80490 bin 1