AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: asm GCA 900155255 1
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AAI clade 2
medoid: asm GCA 003225555 1
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AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
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AAI clade 4
medoid: miga BA16A LX33 339
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AAI clade 5
medoid: asm GCA 002344625 1
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AAI clade 6
medoid: miga ZQ19A BG 240
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AAI clade 7
medoid: asm GCA 003220495 1
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AAI clade 8
medoid: asm GCA 001768045 1
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AAI clade 9
medoid: miga ZQ19A BG 239
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AAI clade 10
medoid: asm GCA 002508675 1
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AAI clade 11
medoid: miga PU18A 2609459660
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AAI clade 12
medoid: asm GCA 003662385 1
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AAI clade 13
medoid: asm GCA 002869845 2
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AAI clade 14
medoid: miga ZQ19A BG 334
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AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
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AAI clade 16
medoid: asm GCA 003218215 1
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AAI clade 17
medoid: gb PMWP00000000
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AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
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AAI clade 19
medoid: miga ZQ19A BG 192
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AAI clade 20
medoid: asm GCA 003222055 1
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AAI clade 21
medoid: asm GCA 002304435 1
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AAI clade 22
medoid: gb PMOA00000000
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AAI clade 23
medoid: asm GCA 001180165 1
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AAI clade 24
medoid: asm GCA 900155275 1
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AAI clade 25
medoid: asm GCA 003562785 1
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AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
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AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
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AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
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AAI clade 29
medoid: asm GCA 900317055 1
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AAI clade 30
medoid: gb MERW00000000
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AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
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AAI clade 32
medoid: asm GCA 002320005 1
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AAI clade 33
medoid: asm GCA 900318825 1
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AAI clade 34
medoid: miga BA16A 35 5E
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AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
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AAI clade 36
medoid: asm GCA 001604115 1
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AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
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AAI clade 38
medoid: miga BA16A 35 12A
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AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
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AAI clade 40
medoid: asm GCA 002372655 1
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AAI clade 41
medoid: miga ZQ19A BG 670
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AAI clade 42
medoid: asm GCA 002732585 1
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AAI clade 43
medoid: gb MFTG00000000
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AAI clade 44
medoid: asm GCF 000217915 1
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AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
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AAI clade 46
medoid: asm GCA 005503595 1
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AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
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AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
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AAI clade 49
medoid: asm GCA 002787475 1
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AAI clade 50
medoid: asm GCA 002411275 1
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AAI clade 51
medoid: asm GCA 001003965 1
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AAI clade 52
medoid: asm GCA 900315795 1
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AAI clade 53
medoid: asm GCA 002782265 1
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AAI clade 54
medoid: asm GCA 002506275 1
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AAI clade 55
medoid: asm GCA 002501805 1
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AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
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AAI clade 57
medoid: asm GCA 002362915 1
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AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
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AAI clade 59
medoid: asm GCA 002478295 1
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AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
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AAI clade 61
medoid: asm GCA 002373045 1
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AAI clade 62
medoid: gb PLQF00000000
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AAI clade 63
medoid: asm GCA 002352835 1
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AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
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AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
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AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
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AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
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AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
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AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
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AAI clade 70
medoid: asm GCA 002369075 1
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AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
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AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
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AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
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AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
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AAI clade 75
medoid: asm GCA 002294525 1
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AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
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AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
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AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
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AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
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AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 80-1
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 80-1-1
medoid: miga PS19A NielsenHB 2014 O2 UC46 2 bin 28
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AAI clade 80-1-2
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 80-1-2-1
medoid: asm GCA 002320115 1
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AAI clade 80-1-2-2
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 80-1-2-2-1
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 80-1-2-2-1-1
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 80-1-2-2-1-1-1
medoid: asm GCA 002396135 1
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AAI clade 80-1-2-2-1-1-2
medoid: miga PS19A XieH 2016 YSZC12003 37205 bin 67
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AAI clade 80-1-2-2-1-1-2-1
medoid: miga PS19A SchirmerM 2016 G88888 bin 4
8 datasets: miga PS19A BackhedF 2015 SID1 4M bin 16 (AAI: 97.66%), miga PS19A ChengpingW 2017 AS15raw bin 23 (AAI: 97.69%), miga PS19A LiJ 2017 H1M512840 bin 52 (AAI: 97.06%), miga PS19A LiJ 2017 nHM612836 bin 1 (AAI: 97.65%), miga PS19A LiSS 2016 FAT 008 22 0 0 bin 3 (AAI: 97.65%), miga PS19A SchirmerM 2016 G88888 bin 4 (AAI: 100.0%), miga PS19A XieH 2016 YSZC12003 37205 bin 67 (AAI: 97.94%), and miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4 (AAI: 97.78%)
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AAI clade 80-1-2-2-1-1-2-2
medoid: miga PS19A LiJ 2017 H2M515921 bin 57
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AAI clade 80-1-2-2-1-1-2-3
medoid: miga PS19A RaymondF 2016 P10E0 bin 52
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AAI clade 80-1-2-2-1-1-2-4
medoid: miga PS19A SchirmerM 2016 G88721 bin 2
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AAI clade 80-1-2-2-1-1-2-5
medoid: miga PS19A ZeeviD 2015 PNP Main 270 megahit bin 3
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AAI clade 80-1-2-2-1-1-2-1
medoid: miga PS19A SchirmerM 2016 G88888 bin 4
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AAI clade 80-1-2-2-1-1-3
medoid: miga PS19A BackhedF 2015 SID172 M bin 69
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AAI clade 80-1-2-2-1-1-4
medoid: miga PS19A BackhedF 2015 SID546 12M bin 20
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AAI clade 80-1-2-2-1-1-5
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES35 bin 13
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AAI clade 80-1-2-2-1-1-6
medoid: miga PS19A CM madagascar A11 01 1FE bin 1
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AAI clade 80-1-2-2-1-1-7
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 65
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AAI clade 80-1-2-2-1-1-8
medoid: miga PS19A ChengpingW 2017 AS38raw bin 16
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AAI clade 80-1-2-2-1-1-9
medoid: miga PS19A ChengpingW 2017 AS81raw bin 21
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AAI clade 80-1-2-2-1-1-10
medoid: miga PS19A ChengpingW 2017 AS9raw bin 4
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AAI clade 80-1-2-2-1-1-11
medoid: miga PS19A CosteaPI 2017 SID713A073 11 90 0 bin 17
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AAI clade 80-1-2-2-1-1-12
medoid: miga PS19A CosteaPI 2017 SID713B052 11 0 0 bin 25
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AAI clade 80-1-2-2-1-1-13
medoid: miga PS19A FengQ 2015 SID31714 bin 43
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AAI clade 80-1-2-2-1-1-14
medoid: miga PS19A FerrettiP 2018 CA C10039MS2670FE t0M16 bin 3
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AAI clade 80-1-2-2-1-1-15
medoid: miga PS19A GeversD 2014 SKBSTL013 bin 1
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AAI clade 80-1-2-2-1-1-16
medoid: miga PS19A HanniganGD 2017 MG100133 bin 7
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AAI clade 80-1-2-2-1-1-17
medoid: miga PS19A HanniganGD 2017 MG100162 bin 2
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AAI clade 80-1-2-2-1-1-18
medoid: miga PS19A HeQ 2017 RSZAXPI003079 113 bin 35
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AAI clade 80-1-2-2-1-1-19
medoid: miga PS19A HeQ 2017 SZAXPI029461 129 bin 13
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AAI clade 80-1-2-2-1-1-20
medoid: miga PS19A HeQ 2017 SZAXPI029593 133 bin 52
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AAI clade 80-1-2-2-1-1-21
medoid: miga PS19A HMP 2012 SRS047014 bin 35
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AAI clade 80-1-2-2-1-1-22
medoid: miga PS19A IjazUZ 2017 S119 a WGS megahit bin 5
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AAI clade 80-1-2-2-1-1-23
medoid: miga PS19A IjazUZ 2017 S33 a WGS megahit bin 13
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AAI clade 80-1-2-2-1-1-24
medoid: miga PS19A YuJ 2015 SZAXPI015264 87 bin 40
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AAI clade 80-1-2-2-1-1-25
medoid: miga PS19A KarlssonFH 2013 S288 bin 28
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AAI clade 80-1-2-2-1-1-26
medoid: miga PS19A LeChatelierE 2013 MH0191 bin 18
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AAI clade 80-1-2-2-1-1-27
medoid: miga PS19A LiJ 2014 MH0387 bin 1
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AAI clade 80-1-2-2-1-1-28
medoid: miga PS19A LiJ 2014 V1 CD43 0 bin 19
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AAI clade 80-1-2-2-1-1-29
medoid: miga PS19A LiSS 2016 FAT 012 22 84 0 bin 12
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AAI clade 80-1-2-2-1-1-30
medoid: miga PS19A LoombaR 2017 SID0018 fze bin 2
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AAI clade 80-1-2-2-1-1-31
medoid: miga PS19A LouisS 2016 AS61 24 bin 4
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AAI clade 80-1-2-2-1-1-32
medoid: miga PS19A Obregon TitoAJ 2015 NO20 bin 15
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AAI clade 80-1-2-2-1-1-33
medoid: miga PS19A QinJ 2012 CON 001 bin 15
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AAI clade 80-1-2-2-1-1-34
medoid: miga PS19A SchirmerM 2016 G88704 bin 17
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AAI clade 80-1-2-2-1-1-35
medoid: miga PS19A SchirmerM 2016 G88744 bin 5
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AAI clade 80-1-2-2-1-1-36
medoid: miga PS19A SchirmerM 2016 G88802 bin 8
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AAI clade 80-1-2-2-1-1-37
medoid: miga PS19A SchirmerM 2016 G88837 bin 14
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AAI clade 80-1-2-2-1-1-38
medoid: miga PS19A SchirmerM 2016 G88885 bin 7
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AAI clade 80-1-2-2-1-1-39
medoid: miga PS19A SchirmerM 2016 G88916 bin 3
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AAI clade 80-1-2-2-1-1-40
medoid: miga PS19A SchirmerM 2016 G88937 bin 16
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AAI clade 80-1-2-2-1-1-41
medoid: miga PS19A SchirmerM 2016 G89081 bin 12
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AAI clade 80-1-2-2-1-1-42
medoid: miga PS19A SchirmerM 2016 G89159 bin 15
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AAI clade 80-1-2-2-1-1-43
medoid: miga PS19A VatanenT 2016 G69163 bin 6
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AAI clade 80-1-2-2-1-1-44
medoid: miga PS19A VatanenT 2016 G78592 bin 1
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AAI clade 80-1-2-2-1-1-45
medoid: miga PS19A VatanenT 2016 G80505 bin 1
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AAI clade 80-1-2-2-1-1-46
medoid: miga PS19A VincentC 2016 MM094 2 megahit bin 1
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AAI clade 80-1-2-2-1-1-47
medoid: miga PS19A WenC 2017 RA054 bin 10
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AAI clade 80-1-2-2-1-1-48
medoid: miga PS19A XieH 2016 YSZC12003 35658 bin 28
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AAI clade 80-1-2-2-1-1-49
medoid: miga PS19A XieH 2016 YSZC12003 36118 bin 21
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AAI clade 80-1-2-2-1-1-50
medoid: miga PS19A XieH 2016 YSZC12003 36696 bin 71
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AAI clade 80-1-2-2-1-1-51
medoid: miga PS19A XieH 2016 YSZC12003 37305R1 bin 39
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AAI clade 80-1-2-2-1-1-52
medoid: miga PS19A XieH 2016 YSZC12003 37331 bin 69
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AAI clade 80-1-2-2-1-1-53
medoid: miga PS19A XieH 2016 YSZC12003 37545 bin 18
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AAI clade 80-1-2-2-1-1-54
medoid: miga PS19A YuJ 2015 SZAXPI003419 6 bin 29
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AAI clade 80-1-2-2-1-1-55
medoid: miga PS19A ZeeviD 2015 PNP Main 352 megahit bin 24
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AAI clade 80-1-2-2-1-1-56
medoid: miga PS19A ZeeviD 2015 PNP Main 399 megahit bin 34
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AAI clade 80-1-2-2-1-1-57
medoid: miga PS19A ZeeviD 2015 PNP Main 50 megahit bin 26
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AAI clade 80-1-2-2-1-1-58
medoid: miga PS19A ZeeviD 2015 PNP Main 615 megahit bin 17
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AAI clade 80-1-2-2-1-1-59
medoid: miga PS19A ZeeviD 2015 PNP Main 6 megahit bin 31
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AAI clade 80-1-2-2-1-1-60
medoid: miga PS19A ZeeviD 2015 PNP Validation 72 megahit bin 14
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AAI clade 80-1-2-2-1-1-61
medoid: miga PS19A ZellerG 2014 CCIS44743950ST 4 0 bin 54
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AAI clade 80-1-2-2-1-1-62
medoid: miga PS19A ZellerG 2014 CCIS78100604ST 4 0 bin 15
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AAI clade 80-1-2-2-1-1-63
medoid: miga PS19A ZellerG 2014 CCMD11006829ST 21 0 bin 32
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AAI clade 80-1-2-2-1-1-1
medoid: asm GCA 002396135 1
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AAI clade 80-1-2-2-1-2
medoid: miga PS19A IjazUZ 2017 S140 a WGS megahit bin 5
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AAI clade 80-1-2-2-1-3
medoid: miga PS19A LiJ 2017 H2F413935 bin 33
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AAI clade 80-1-2-2-1-1
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 80-1-2-2-2
medoid: miga PS19A KarlssonFH 2013 S552 bin 28
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AAI clade 80-1-2-2-1
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 80-1-2-3
medoid: miga PS19A SchirmerM 2016 G88989 bin 4
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AAI clade 80-1-2-4
medoid: miga PS19A FengQ 2015 SID530444 bin 55
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AAI clade 80-1-2-5
medoid: miga PS19A NielsenHB 2014 V1 UC50 1 bin 41
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AAI clade 80-1-2-6
medoid: miga PS19A VincentC 2016 MM090 2 megahit bin 35
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AAI clade 80-1-2-1
medoid: asm GCA 002320115 1
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AAI clade 80-1-1
medoid: miga PS19A NielsenHB 2014 O2 UC46 2 bin 28
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AAI clade 80-2
medoid: asm GCA 002339065 1
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AAI clade 80-3
medoid: miga PS19A BackhedF 2015 SID240 12M bin 21
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AAI clade 80-4
medoid: miga PS19A CM madagascar A28 02 1FE bin 41
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AAI clade 80-1
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
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AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
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AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
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AAI clade 84
medoid: asm GCA 003020965 1
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AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
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AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
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AAI clade 87
medoid: asm GCA 001701225 1
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AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
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AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
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AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
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AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
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AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
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AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1