AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: asm GCA 900155255 1
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AAI clade 2
medoid: asm GCA 003225555 1
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AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
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AAI clade 4
medoid: miga BA16A LX33 339
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AAI clade 5
medoid: asm GCA 002344625 1
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AAI clade 6
medoid: miga ZQ19A BG 240
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AAI clade 7
medoid: asm GCA 003220495 1
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AAI clade 8
medoid: asm GCA 001768045 1
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AAI clade 8-1
medoid: asm GCA 002345645 1
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AAI clade 8-2
medoid: asm GCA 002332795 1
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AAI clade 8-3
medoid: asm GCA 001796835 1
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AAI clade 8-4
medoid: asm GCA 001796915 1
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AAI clade 8-5
medoid: asm GCA 002432795 1
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AAI clade 8-6
medoid: asm GCA 001603775 1
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AAI clade 8-7
medoid: asm GCA 003562215 1
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AAI clade 8-8
medoid: asm GCA 001768045 1
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AAI clade 8-9
medoid: asm GCA 001871755 1
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AAI clade 8-10
medoid: asm GCA 001797045 1
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AAI clade 8-11
medoid: miga AH17A FS844 Bin 115
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AAI clade 8-12
medoid: asm GCA 002878295 2
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AAI clade 8-13
medoid: asm GCA 002238555 1
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AAI clade 8-14
medoid: asm GCA 002391565 1
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AAI clade 8-15
medoid: asm GCA 002428985 1
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AAI clade 8-16
medoid: asm GCA 003670495 1
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AAI clade 8-17
medoid: asm GCA 001303965 1
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AAI clade 8-18
medoid: asm GCA 001303545 1
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AAI clade 8-19
medoid: asm GCA 002399085 1
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AAI clade 8-20
medoid: asm GCA 002328785 1
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AAI clade 8-21
medoid: asm GCA 002347485 1
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AAI clade 8-22
medoid: asm GCA 003599805 1
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AAI clade 8-23
medoid: miga WD15A P1181 102 97
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AAI clade 8-24
medoid: asm GCA 002377585 1
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AAI clade 8-25
medoid: asm GCA 002329325 1
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AAI clade 8-26
medoid: asm GCA 002328075 1
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AAI clade 8-27
medoid: asm GCA 002327925 1
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AAI clade 8-28
medoid: asm GCA 002345215 1
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AAI clade 8-29
medoid: miga SS18B METABAT VerySpecific 208
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AAI clade 8-30
medoid: asm GCA 004377365 1
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AAI clade 8-31
medoid: asm GCA 002400365 1
3 datasets: asm GCA 002400365 1 (AAI: 100.0%), asm GCA 001795155 1 (AAI: 52.55%), and gb MWSY00000000 (AAI: 48.26%)
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AAI clade 8-32
medoid: asm GCA 002783275 1
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AAI clade 8-33
medoid: asm GCA 002423325 1
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AAI clade 8-34
medoid: asm GCA 001796945 1
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AAI clade 8-35
medoid: gb LMZS00000000
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AAI clade 8-36
medoid: asm GCA 002455215 1
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AAI clade 8-37
medoid: miga SS18B METABAT VerySpecific 338
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AAI clade 8-38
medoid: asm GCA 002436065 1
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AAI clade 8-39
medoid: asm GCA 002440805 1
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AAI clade 8-40
medoid: asm GCA 002417785 1
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AAI clade 8-41
medoid: asm GCA 002313895 1
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AAI clade 8-42
medoid: asm GCA 002311595 1
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AAI clade 8-43
medoid: gb PMYC00000000
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AAI clade 8-44
medoid: miga DE18A TARA RED MAG 00070
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AAI clade 8-45
medoid: asm GCA 002327645 1
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AAI clade 8-46
medoid: asm GCA 002347295 1
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AAI clade 8-47
medoid: asm GCA 002362735 1
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AAI clade 8-48
medoid: asm GCA 002382615 1
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AAI clade 8-49
medoid: asm GCA 001795315 1
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AAI clade 8-50
medoid: asm GCA 002421585 1
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AAI clade 8-51
medoid: asm GCA 002407845 1
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AAI clade 8-52
medoid: asm GCA 001796805 1
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AAI clade 8-53
medoid: gb PMDJ00000000
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AAI clade 8-54
medoid: asm GCA 001796555 1
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AAI clade 8-55
medoid: asm GCA 001795035 1
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AAI clade 8-56
medoid: asm GCA 004377265 1
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AAI clade 8-57
medoid: asm GCA 004376105 1
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AAI clade 8-58
medoid: gb PLND00000000
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AAI clade 8-59
medoid: asm GCA 001796885 1
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AAI clade 8-60
medoid: asm GCA 001796995 1
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AAI clade 8-61
medoid: asm GCA 001799355 1
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AAI clade 8-62
medoid: asm GCA 003597995 1
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AAI clade 8-63
medoid: asm GCA 003648125 1
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AAI clade 8-64
medoid: asm GCA 004376895 1
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AAI clade 8-65
medoid: asm GCA 003563035 1
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AAI clade 8-66
medoid: asm GCA 003562415 1
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AAI clade 8-67
medoid: asm GCA 003560355 1
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AAI clade 8-68
medoid: asm GCA 003551205 1
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AAI clade 8-69
medoid: asm GCA 003552785 1
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AAI clade 8-70
medoid: asm GCA 002084875 1
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AAI clade 8-71
medoid: asm GCA 003648195 1
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AAI clade 8-72
medoid: asm GCA 900491745 1
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AAI clade 8-73
medoid: asm GCA 001914715 1
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AAI clade 8-74
medoid: gb PLNY00000000
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AAI clade 8-75
medoid: gb PMDR00000000
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AAI clade 8-76
medoid: gb MGON00000000
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AAI clade 8-77
medoid: gb QEXY00000000 1
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AAI clade 8-78
medoid: miga SS18B METABAT VerySpecific 106
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AAI clade 8-79
medoid: miga SS18B METABAT VerySpecific 138
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AAI clade 8-80
medoid: miga SW19B 10677 0035 idba bin 103
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AAI clade 8-81
medoid: miga AH17A FS872 Bin 8
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AAI clade 8-82
medoid: miga AP18A bin 11
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AAI clade 8-83
medoid: asm GCA 002793355 1
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AAI clade 8-84
medoid: asm GCA 002779515 1
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AAI clade 8-85
medoid: miga WD15A P1163 102 21
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AAI clade 8-86
medoid: miga WD15A P1181 101 2
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AAI clade 8-1
medoid: asm GCA 002345645 1
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AAI clade 9
medoid: miga ZQ19A BG 239
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AAI clade 10
medoid: asm GCA 002508675 1
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AAI clade 11
medoid: miga PU18A 2609459660
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AAI clade 12
medoid: asm GCA 003662385 1
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AAI clade 13
medoid: asm GCA 002869845 2
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AAI clade 14
medoid: miga ZQ19A BG 334
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AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
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AAI clade 16
medoid: asm GCA 003218215 1
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AAI clade 17
medoid: gb PMWP00000000
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AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
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AAI clade 19
medoid: miga ZQ19A BG 192
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AAI clade 20
medoid: asm GCA 003222055 1
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AAI clade 21
medoid: asm GCA 002304435 1
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AAI clade 22
medoid: gb PMOA00000000
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AAI clade 23
medoid: asm GCA 001180165 1
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AAI clade 24
medoid: asm GCA 900155275 1
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AAI clade 25
medoid: asm GCA 003562785 1
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AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
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AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
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AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
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AAI clade 29
medoid: asm GCA 900317055 1
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AAI clade 30
medoid: gb MERW00000000
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AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
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AAI clade 32
medoid: asm GCA 002320005 1
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AAI clade 33
medoid: asm GCA 900318825 1
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AAI clade 34
medoid: miga BA16A 35 5E
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AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
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AAI clade 36
medoid: asm GCA 001604115 1
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AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
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AAI clade 38
medoid: miga BA16A 35 12A
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AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
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AAI clade 40
medoid: asm GCA 002372655 1
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AAI clade 41
medoid: miga ZQ19A BG 670
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AAI clade 42
medoid: asm GCA 002732585 1
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AAI clade 43
medoid: gb MFTG00000000
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AAI clade 44
medoid: asm GCF 000217915 1
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AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
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AAI clade 46
medoid: asm GCA 005503595 1
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AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
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AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
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AAI clade 49
medoid: asm GCA 002787475 1
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AAI clade 50
medoid: asm GCA 002411275 1
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AAI clade 51
medoid: asm GCA 001003965 1
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AAI clade 52
medoid: asm GCA 900315795 1
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AAI clade 53
medoid: asm GCA 002782265 1
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AAI clade 54
medoid: asm GCA 002506275 1
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AAI clade 55
medoid: asm GCA 002501805 1
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AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
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AAI clade 57
medoid: asm GCA 002362915 1
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AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
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AAI clade 59
medoid: asm GCA 002478295 1
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AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
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AAI clade 61
medoid: asm GCA 002373045 1
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AAI clade 62
medoid: gb PLQF00000000
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AAI clade 63
medoid: asm GCA 002352835 1
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AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
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AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
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AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
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AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
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AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
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AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
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AAI clade 70
medoid: asm GCA 002369075 1
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AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
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AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
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AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
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AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
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AAI clade 75
medoid: asm GCA 002294525 1
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AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
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AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
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AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
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AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
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AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
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AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
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AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
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AAI clade 84
medoid: asm GCA 003020965 1
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AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
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AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
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AAI clade 87
medoid: asm GCA 001701225 1
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AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
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AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
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AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
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AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
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AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
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AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1