AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: asm GCA 900155255 1
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AAI clade 2
medoid: asm GCA 003225555 1
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AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
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AAI clade 4
medoid: miga BA16A LX33 339
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AAI clade 5
medoid: asm GCA 002344625 1
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AAI clade 6
medoid: miga ZQ19A BG 240
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AAI clade 7
medoid: asm GCA 003220495 1
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AAI clade 8
medoid: asm GCA 001768045 1
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AAI clade 9
medoid: miga ZQ19A BG 239
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AAI clade 10
medoid: asm GCA 002508675 1
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AAI clade 11
medoid: miga PU18A 2609459660
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AAI clade 12
medoid: asm GCA 003662385 1
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AAI clade 13
medoid: asm GCA 002869845 2
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AAI clade 14
medoid: miga ZQ19A BG 334
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AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
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AAI clade 16
medoid: asm GCA 003218215 1
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AAI clade 17
medoid: gb PMWP00000000
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AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
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AAI clade 19
medoid: miga ZQ19A BG 192
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AAI clade 20
medoid: asm GCA 003222055 1
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AAI clade 21
medoid: asm GCA 002304435 1
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AAI clade 22
medoid: gb PMOA00000000
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AAI clade 23
medoid: asm GCA 001180165 1
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AAI clade 24
medoid: asm GCA 900155275 1
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AAI clade 25
medoid: asm GCA 003562785 1
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AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
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AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
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AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
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AAI clade 29
medoid: asm GCA 900317055 1
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AAI clade 30
medoid: gb MERW00000000
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AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
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AAI clade 32
medoid: asm GCA 002320005 1
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AAI clade 33
medoid: asm GCA 900318825 1
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AAI clade 34
medoid: miga BA16A 35 5E
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AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
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AAI clade 36
medoid: asm GCA 001604115 1
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AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
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AAI clade 38
medoid: miga BA16A 35 12A
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AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
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AAI clade 40
medoid: asm GCA 002372655 1
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AAI clade 41
medoid: miga ZQ19A BG 670
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AAI clade 42
medoid: asm GCA 002732585 1
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AAI clade 43
medoid: gb MFTG00000000
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AAI clade 44
medoid: asm GCF 000217915 1
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AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
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AAI clade 46
medoid: asm GCA 005503595 1
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AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
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AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
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AAI clade 49
medoid: asm GCA 002787475 1
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AAI clade 50
medoid: asm GCA 002411275 1
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AAI clade 51
medoid: asm GCA 001003965 1
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AAI clade 52
medoid: asm GCA 900315795 1
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AAI clade 53
medoid: asm GCA 002782265 1
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AAI clade 54
medoid: asm GCA 002506275 1
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AAI clade 55
medoid: asm GCA 002501805 1
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AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
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AAI clade 57
medoid: asm GCA 002362915 1
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AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
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AAI clade 59
medoid: asm GCA 002478295 1
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AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
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AAI clade 61
medoid: asm GCA 002373045 1
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AAI clade 62
medoid: gb PLQF00000000
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AAI clade 63
medoid: asm GCA 002352835 1
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AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
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AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
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AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
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AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
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AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
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AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
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AAI clade 70
medoid: asm GCA 002369075 1
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AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
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AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
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AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
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AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
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AAI clade 75
medoid: asm GCA 002294525 1
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AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
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AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
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AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
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AAI clade 78-1
medoid: asm GCA 002307055 1
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AAI clade 78-2
medoid: miga PS19A LiJ 2014 MH0358 bin 56
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AAI clade 78-3
medoid: asm GCA 002315975 1
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AAI clade 78-4
medoid: miga PS19A XieH 2016 YSZC12003 37315 bin 107
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AAI clade 78-5
medoid: miga SW19B 10677 0057 idba bin 198
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AAI clade 78-6
medoid: asm GCA 002315275 1
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AAI clade 78-7
medoid: asm GCA 002359425 1
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AAI clade 78-8
medoid: asm GCA 900316205 1
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AAI clade 78-9
medoid: miga PS19A XieH 2016 YSZC12003 36474 bin 5
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AAI clade 78-10
medoid: miga PS19A XieH 2016 YSZC12003 37181R1 bin 102
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AAI clade 78-11
medoid: asm GCA 002427465 1
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AAI clade 78-12
medoid: asm GCA 900320595 1
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AAI clade 78-13
medoid: asm GCA 900313925 1
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AAI clade 78-14
medoid: miga SW19B 10677 0035 idba bin 49
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AAI clade 78-15
medoid: asm GCA 900316745 1
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AAI clade 78-16
medoid: miga PS19A CosteaPI 2017 SID713B026 11 90 0 bin 59
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AAI clade 78-17
medoid: asm GCA 900317905 1
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AAI clade 78-18
medoid: miga SW19B 10676 0004 idba bin 115
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AAI clade 78-19
medoid: miga SW19B 10572 0026 idba bin 49
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AAI clade 78-20
medoid: miga SW19B 10674 0010 idba bin 21
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AAI clade 78-21
medoid: miga SW19B 10678 0031 idba bin 69
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AAI clade 78-22
medoid: miga SW19B 10676 0032 idba bin 154
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AAI clade 78-23
medoid: miga SW19B 10676 min2k bin 459
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AAI clade 78-24
medoid: miga SW19B 10676 0048 idba bin 60
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AAI clade 78-25
medoid: miga SW19B 10677 min2k bin 1754
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AAI clade 78-26
medoid: miga SW19B 10675 0013 idba bin 47
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AAI clade 78-27
medoid: miga SW19B 10675 0013 idba bin 55
1 dataset: miga SW19B 10675 0013 idba bin 55 (AAI: 100.0%)
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AAI clade 78-28
medoid: miga SW19B 10676 min2k bin 3992
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AAI clade 78-29
medoid: miga SW19B 10677 0028 idba bin 106
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AAI clade 78-30
medoid: miga SW19B 10572 0037 idba bin 56
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AAI clade 78-31
medoid: miga SW19B 10674 0009 idba bin 172
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AAI clade 78-32
medoid: miga SW19B 10674 min2k bin 2047
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AAI clade 78-33
medoid: miga SW19B 10674 0004 idba bin 199
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AAI clade 78-34
medoid: miga PS19A RaymondF 2016 P6C0 bin 19
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AAI clade 78-35
medoid: miga SW19B 10675 min2k bin 3462
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AAI clade 78-36
medoid: miga SW19B 10677 0023 idba bin 128
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AAI clade 78-37
medoid: miga SW19B 10674 min2k bin 1263
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AAI clade 78-38
medoid: miga PS19A LouisS 2016 AS62 3 bin 23
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AAI clade 78-39
medoid: miga PS19A VogtmannE 2016 MMRS21365932ST 27 0 0 bin 21
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AAI clade 78-40
medoid: miga PS19A CosteaPI 2017 SID713B040 11 0 0 bin 56
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AAI clade 78-41
medoid: miga PS19A CosteaPI 2017 SID713B072 11 0 0 bin 31
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AAI clade 78-42
medoid: miga PS19A FengQ 2015 SID530295 bin 93
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AAI clade 78-43
medoid: miga PS19A FengQ 2015 SID530890 bin 59
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AAI clade 78-44
medoid: miga PS19A FengQ 2015 SID531416 bin 49
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AAI clade 78-45
medoid: miga PS19A VogtmannE 2016 MMRS81135225ST 27 0 0 bin 21
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AAI clade 78-46
medoid: miga PS19A LiJ 2014 V1 FI36 bin 72
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AAI clade 78-47
medoid: miga PS19A Obregon TitoAJ 2015 SM28 bin 43
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AAI clade 78-48
medoid: miga PS19A RaymondF 2016 P2E7 bin 68
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AAI clade 78-49
medoid: miga PS19A RampelliS 2015 H25 bin 11
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AAI clade 78-50
medoid: miga PS19A RaymondF 2016 P21E90 bin 35
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AAI clade 78-51
medoid: miga PS19A XieH 2016 YSZC12003 35583 bin 24
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AAI clade 78-1
medoid: asm GCA 002307055 1
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AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
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AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
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AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
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AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
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AAI clade 84
medoid: asm GCA 003020965 1
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AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
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AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
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AAI clade 87
medoid: asm GCA 001701225 1
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AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
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AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
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AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
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AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
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AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
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AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1