AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: asm GCA 900155255 1
  • AAI clade 2 medoid: asm GCA 003225555 1
  • AAI clade 3 medoid: miga PS19A HMP 2012 SRS017439 bin 51
  • AAI clade 4 medoid: miga BA16A LX33 339
  • AAI clade 5 medoid: asm GCA 002344625 1
  • AAI clade 6 medoid: miga ZQ19A BG 240
  • AAI clade 7 medoid: asm GCA 003220495 1
  • AAI clade 8 medoid: asm GCA 001768045 1
  • AAI clade 9 medoid: miga ZQ19A BG 239
  • AAI clade 10 medoid: asm GCA 002508675 1
  • AAI clade 11 medoid: miga PU18A 2609459660
  • AAI clade 12 medoid: asm GCA 003662385 1
  • AAI clade 13 medoid: asm GCA 002869845 2
  • AAI clade 14 medoid: miga ZQ19A BG 334
  • AAI clade 15 medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
  • AAI clade 16 medoid: asm GCA 003218215 1
  • AAI clade 17 medoid: gb PMWP00000000
  • AAI clade 18 medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
  • AAI clade 19 medoid: miga ZQ19A BG 192
  • AAI clade 20 medoid: asm GCA 003222055 1
  • AAI clade 21 medoid: asm GCA 002304435 1
  • AAI clade 22 medoid: gb PMOA00000000
  • AAI clade 23 medoid: asm GCA 001180165 1
  • AAI clade 24 medoid: asm GCA 900155275 1
  • AAI clade 25 medoid: asm GCA 003562785 1
  • AAI clade 26 medoid: miga PS19A FengQ 2015 SID531281 bin 23
  • AAI clade 27 medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
  • AAI clade 28 medoid: miga PS19A CM madagascar A27 02 1FE bin 15
  • AAI clade 29 medoid: asm GCA 900317055 1
  • AAI clade 30 medoid: gb MERW00000000
  • AAI clade 31 medoid: miga PS19A HMP 2012 SRS011126 bin 64
  • AAI clade 32 medoid: asm GCA 002320005 1
  • AAI clade 33 medoid: asm GCA 900318825 1
  • AAI clade 34 medoid: miga BA16A 35 5E
  • AAI clade 35 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
  • AAI clade 36 medoid: asm GCA 001604115 1
  • AAI clade 37 medoid: miga SW19B 10676 0045 idba bin 101
  • AAI clade 38 medoid: miga BA16A 35 12A
  • AAI clade 39 medoid: miga SW19B 10678 0025 idba bin 69
  • AAI clade 40 medoid: asm GCA 002372655 1
  • AAI clade 41 medoid: miga ZQ19A BG 670
  • AAI clade 42 medoid: asm GCA 002732585 1
  • AAI clade 43 medoid: gb MFTG00000000
  • AAI clade 44 medoid: asm GCF 000217915 1
  • AAI clade 45 medoid: miga SW19B 10676 0006 idba bin 64
  • AAI clade 46 medoid: asm GCA 005503595 1
  • AAI clade 47 medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
  • AAI clade 48 medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
  • AAI clade 49 medoid: asm GCA 002787475 1
  • AAI clade 50 medoid: asm GCA 002411275 1
  • AAI clade 51 medoid: asm GCA 001003965 1
  • AAI clade 52 medoid: asm GCA 900315795 1
  • AAI clade 53 medoid: asm GCA 002782265 1
  • AAI clade 54 medoid: asm GCA 002506275 1
  • AAI clade 55 medoid: asm GCA 002501805 1
  • AAI clade 56 medoid: miga PS19A HMP 2012 SRS024289 bin 35
  • AAI clade 57 medoid: asm GCA 002362915 1
  • AAI clade 58 medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
  • AAI clade 59 medoid: asm GCA 002478295 1
  • AAI clade 60 medoid: miga PS19A HMP 2012 SRS019127 bin 5
  • AAI clade 61 medoid: asm GCA 002373045 1
  • AAI clade 62 medoid: gb PLQF00000000
  • AAI clade 63 medoid: asm GCA 002352835 1
  • AAI clade 64 medoid: miga PS19A FengQ 2015 SID31700 bin 66
  • AAI clade 65 medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
  • AAI clade 66 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
  • AAI clade 67 medoid: miga SW19B 10678 0003 idba bin 42
  • AAI clade 68 medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
  • AAI clade 69 medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
  • AAI clade 70 medoid: asm GCA 002369075 1
  • AAI clade 71 medoid: miga SW19B 10675 0017 idba bin 79
  • AAI clade 72 medoid: miga PS19A CM madagascar V53 02 1FE bin 36
  • AAI clade 73 medoid: miga PS19A RampelliS 2015 H1 bin 24
  • AAI clade 74 medoid: miga PS19A HMP 2012 SRS024138 bin 26
  • AAI clade 75 medoid: asm GCA 002294525 1
  • AAI clade 76 medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
    • AAI clade 76-1 medoid: asm GCA 002453475 1
    • AAI clade 76-2 medoid: asm GCA 002306535 1
    • AAI clade 76-3 medoid: miga PS19A XieH 2016 YSZC12003 37337 bin 70
    • AAI clade 76-4 medoid: asm GCA 002386045 1
    • AAI clade 76-5 medoid: asm GCA 002431675 1
    • AAI clade 76-6 medoid: miga PS19A FengQ 2015 SID31009 bin 45
    • AAI clade 76-7 medoid: miga PS19A BackhedF 2015 SID345 4M bin 6
    • AAI clade 76-8 medoid: asm GCA 002329295 1
    • AAI clade 76-9 medoid: miga PS19A FerrettiP 2018 CA C10024IS2415FE t3M15 bin 11
    • AAI clade 76-10 medoid: miga PS19A FengQ 2015 SID31416 bin 30
    • AAI clade 76-11 medoid: miga PS19A GeversD 2014 SKSTL0004 bin 39
    • AAI clade 76-12 medoid: asm GCA 900314295 1
    • AAI clade 76-13 medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
    • AAI clade 76-14 medoid: asm GCA 002367105 1
    • AAI clade 76-15 medoid: asm GCA 002308955 1
    • AAI clade 76-16 medoid: miga PS19A VogtmannE 2016 MMRS77487595ST 27 0 0 bin 80
    • AAI clade 76-17 medoid: miga PS19A LeChatelierE 2013 MH0086 bin 2
    • AAI clade 76-18 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 12
    • AAI clade 76-19 medoid: miga PS19A BritoIL 2016 W1 1 ST bin 26
    • AAI clade 76-20 medoid: asm GCA 002369135 1
    • AAI clade 76-21 medoid: miga PS19A CosteaPI 2017 SID713B073 11 90 0 bin 22
    • AAI clade 76-22 medoid: miga SW19B 10676 0046 idba bin 80
    • AAI clade 76-23 medoid: asm GCA 900319565 1
    • AAI clade 76-24 medoid: miga SW19B 10674 min2k bin 3427
    • AAI clade 76-25 medoid: miga PS19A HeQ 2017 SZAXPI029501 104 bin 32
    • AAI clade 76-26 medoid: miga SW19B 10678 0032 idba bin 60
    • AAI clade 76-27 medoid: miga SW19B 10677 0023 idba bin 105
    • AAI clade 76-28 medoid: miga PS19A GeversD 2014 SKBSTL007 bin 24
    • AAI clade 76-29 medoid: miga SW19B 10674 0009 idba bin 168
    • AAI clade 76-30 medoid: miga PS19A KarlssonFH 2013 S488 bin 63
    • AAI clade 76-31 medoid: asm GCA 002374095 1
    • AAI clade 76-32 medoid: miga PS19A QinJ 2012 T2D 092 bin 49
    • AAI clade 76-33 medoid: asm GCA 900315305 1
    • AAI clade 76-34 medoid: miga SW19B 10674 0017 idba bin 92
    • AAI clade 76-35 medoid: miga PS19A QinJ 2012 T2D 081 bin 2
    • AAI clade 76-36 medoid: miga SW19B 10674 min2k bin 1331
    • AAI clade 76-37 medoid: miga PS19A ZeeviD 2015 PNP Main 463 megahit bin 34
    • AAI clade 76-38 medoid: miga PS19A LiJ 2014 MH0382 bin 33
    • AAI clade 76-39 medoid: miga SW19B 10678 0049 idba bin 30
    • AAI clade 76-40 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES66 bin 78
    • AAI clade 76-41 medoid: miga PS19A BritoIL 2016 M2 46 ST bin 82
    • AAI clade 76-42 medoid: asm GCA 900315945 1
    • AAI clade 76-43 medoid: asm GCA 001797235 1
    • AAI clade 76-44 medoid: miga PS19A HMP 2012 SRS018591 bin 25
    • AAI clade 76-45 medoid: miga PS19A YuJ 2015 SZAXPI003416 4 bin 10
    • AAI clade 76-46 medoid: miga PS19A HeQ 2017 SZAXPI029500 102 bin 10
    • AAI clade 76-47 medoid: miga PS19A ZellerG 2014 CCMD35802077ST 21 0 bin 16
    • AAI clade 76-48 medoid: miga PS19A HMP 2012 SRS044662 bin 40
    • AAI clade 76-49 medoid: miga PS19A HeQ 2017 SZAXPI029494 94 bin 5
    • AAI clade 76-50 medoid: miga SW19B 10676 0016 idba bin 14
    • AAI clade 76-51 medoid: miga SW19B 10676 min2k bin 122
    • AAI clade 76-52 medoid: miga SW19B 10675 min2k bin 1778
    • AAI clade 76-53 medoid: miga SW19B 10674 0017 idba bin 98
    • AAI clade 76-54 medoid: miga PS19A HMP 2012 SRS049389 bin 7
    • AAI clade 76-55 medoid: miga PS19A QinJ 2012 DOM012 bin 28
    • AAI clade 76-56 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES50 bin 54
    • AAI clade 76-57 medoid: miga PS19A BackhedF 2015 SID103 4M bin 4
    • AAI clade 76-58 medoid: miga PS19A NielsenHB 2014 V1 UC16 0 bin 12
    • AAI clade 76-59 medoid: miga PS19A ZellerG 2014 CCIS44743950ST 4 0 bin 43
    • AAI clade 76-60 medoid: miga PS19A BritoIL 2016 W1 1 ST bin 7
    • AAI clade 76-61 medoid: miga PS19A FengQ 2015 SID530172 bin 44
    • AAI clade 76-62 medoid: miga PS19A BackhedF 2015 SID238 M bin 26
    • AAI clade 76-63 medoid: miga PS19A BackhedF 2015 SID128 M bin 40
    • AAI clade 76-64 medoid: miga PS19A XieH 2016 YSZC12003 36116 bin 21
    • AAI clade 76-65 medoid: miga PS19A HMP 2012 SRS015215 bin 44
    • AAI clade 76-66 medoid: miga PS19A ZeeviD 2015 PNP Main 294 megahit bin 63
    • AAI clade 76-67 medoid: miga PS19A BackhedF 2015 SID345 4M bin 14
    • AAI clade 76-68 medoid: miga PS19A BackhedF 2015 SID526 12M bin 28
    • AAI clade 76-69 medoid: miga PS19A HeQ 2017 RSZAXPI003099 133 bin 50
      • AAI clade 76-69-1 medoid: miga PS19A HeQ 2017 RSZAXPI003099 133 bin 50
      • AAI clade 76-69-2 medoid: miga PS19A BackhedF 2015 SID546 4M bin 24
      • AAI clade 76-69-3 medoid: miga PS19A ChengpingW 2017 AS108raw bin 24
      • AAI clade 76-69-4 medoid: miga PS19A HeQ 2017 SZAXPI029463 136 bin 53
      • AAI clade 76-69-5 medoid: miga PS19A Obregon TitoAJ 2015 NO21 bin 23
    • AAI clade 76-70 medoid: miga PS19A HeQ 2017 SZAXPI029494 94 bin 3
    • AAI clade 76-71 medoid: miga PS19A BackhedF 2015 SID590 4M bin 15
    • AAI clade 76-72 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES17 bin 52
    • AAI clade 76-73 medoid: miga PS19A ZellerG 2014 CCMD88272491ST 21 0 bin 3
    • AAI clade 76-74 medoid: miga PS19A LeChatelierE 2013 MH0406 bin 87
    • AAI clade 76-75 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES57 bin 43
    • AAI clade 76-76 medoid: miga PS19A BritoIL 2016 M2 3 ST bin 71
    • AAI clade 76-77 medoid: miga PS19A CM periimplantitis SP 261SPT T016 bin 14
    • AAI clade 76-78 medoid: miga PS19A FengQ 2015 SID530373 bin 78
    • AAI clade 76-79 medoid: miga PS19A LeChatelierE 2013 MH0097 bin 6
    • AAI clade 76-80 medoid: miga PS19A VincentC 2016 MM058 1 megahit bin 20
    • AAI clade 76-81 medoid: miga PS19A VogtmannE 2016 MMRS15137911ST 27 0 0 bin 41
    • AAI clade 76-82 medoid: miga PS19A FengQ 2015 SID531766 bin 2
    • AAI clade 76-83 medoid: miga PS19A HeQ 2017 RSZAXPI003082 116 bin 1
    • AAI clade 76-84 medoid: miga PS19A HMP 2012 SRS016037 bin 1
    • AAI clade 76-85 medoid: miga PS19A LoombaR 2017 SID5639 uuc bin 37
  • AAI clade 77 medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
  • AAI clade 78 medoid: miga SW19B 10677 0035 idba bin 49
  • AAI clade 79 medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
  • AAI clade 80 medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
  • AAI clade 81 medoid: miga PS19A OhJ 2014 MET0095 bin 1
  • AAI clade 82 medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
  • AAI clade 83 medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
  • AAI clade 84 medoid: asm GCA 003020965 1
  • AAI clade 85 medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
  • AAI clade 86 medoid: miga PS19A HMP 2012 SRS023595 bin 63
  • AAI clade 87 medoid: asm GCA 001701225 1
  • AAI clade 88 medoid: miga SW19B 10676 0021 idba bin 107
  • AAI clade 89 medoid: miga SW19B 10678 0026 idba bin 16
  • AAI clade 90 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
  • AAI clade 91 medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
  • AAI clade 92 medoid: miga SW19B 10674 0007 idba bin 173
  • AAI clade 93 medoid: miga PS19A VatanenT 2016 G80490 bin 1