AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: asm GCA 900155255 1
-
AAI clade 2
medoid: asm GCA 003225555 1
-
AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
-
AAI clade 4
medoid: miga BA16A LX33 339
-
AAI clade 5
medoid: asm GCA 002344625 1
-
AAI clade 6
medoid: miga ZQ19A BG 240
-
AAI clade 7
medoid: asm GCA 003220495 1
-
AAI clade 8
medoid: asm GCA 001768045 1
-
AAI clade 9
medoid: miga ZQ19A BG 239
-
AAI clade 10
medoid: asm GCA 002508675 1
-
AAI clade 11
medoid: miga PU18A 2609459660
-
AAI clade 12
medoid: asm GCA 003662385 1
-
AAI clade 13
medoid: asm GCA 002869845 2
-
AAI clade 14
medoid: miga ZQ19A BG 334
-
AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
-
AAI clade 16
medoid: asm GCA 003218215 1
-
AAI clade 17
medoid: gb PMWP00000000
-
AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
-
AAI clade 19
medoid: miga ZQ19A BG 192
-
AAI clade 20
medoid: asm GCA 003222055 1
-
AAI clade 21
medoid: asm GCA 002304435 1
-
AAI clade 22
medoid: gb PMOA00000000
-
AAI clade 23
medoid: asm GCA 001180165 1
-
AAI clade 24
medoid: asm GCA 900155275 1
-
AAI clade 25
medoid: asm GCA 003562785 1
-
AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
-
AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
-
AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
-
AAI clade 29
medoid: asm GCA 900317055 1
-
AAI clade 30
medoid: gb MERW00000000
-
AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
-
AAI clade 32
medoid: asm GCA 002320005 1
-
AAI clade 33
medoid: asm GCA 900318825 1
-
AAI clade 34
medoid: miga BA16A 35 5E
-
AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
-
AAI clade 36
medoid: asm GCA 001604115 1
-
AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
-
AAI clade 38
medoid: miga BA16A 35 12A
-
AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
-
AAI clade 40
medoid: asm GCA 002372655 1
-
AAI clade 41
medoid: miga ZQ19A BG 670
-
AAI clade 42
medoid: asm GCA 002732585 1
-
AAI clade 43
medoid: gb MFTG00000000
-
AAI clade 44
medoid: asm GCF 000217915 1
-
AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
-
AAI clade 46
medoid: asm GCA 005503595 1
-
AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
-
AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
-
AAI clade 49
medoid: asm GCA 002787475 1
-
AAI clade 50
medoid: asm GCA 002411275 1
-
AAI clade 51
medoid: asm GCA 001003965 1
-
AAI clade 52
medoid: asm GCA 900315795 1
-
AAI clade 53
medoid: asm GCA 002782265 1
-
AAI clade 54
medoid: asm GCA 002506275 1
-
AAI clade 55
medoid: asm GCA 002501805 1
-
AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
-
AAI clade 57
medoid: asm GCA 002362915 1
-
AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
-
AAI clade 59
medoid: asm GCA 002478295 1
-
AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
-
AAI clade 61
medoid: asm GCA 002373045 1
-
AAI clade 62
medoid: gb PLQF00000000
-
AAI clade 63
medoid: asm GCA 002352835 1
-
AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
-
AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
-
AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
-
AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
-
AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
-
AAI clade 68-1
medoid: asm GCA 002308495 1
-
AAI clade 68-2
medoid: asm GCA 002492485 1
-
AAI clade 68-3
medoid: asm GCA 002349565 1
-
AAI clade 68-4
medoid: miga SW19B 10677 0050 idba bin 62
-
AAI clade 68-5
medoid: asm GCA 002373615 1
-
AAI clade 68-6
medoid: asm GCA 002373815 1
-
AAI clade 68-7
medoid: asm GCA 002372315 1
-
AAI clade 68-8
medoid: asm GCA 002372275 1
-
AAI clade 68-9
medoid: asm GCA 002393065 1
-
AAI clade 68-10
medoid: asm GCA 002410125 1
-
AAI clade 68-11
medoid: miga PS19A RampelliS 2015 H10 bin 23
-
AAI clade 68-12
medoid: miga SW19B 10676 0025 idba bin 69
-
AAI clade 68-13
medoid: asm GCA 900318605 1
-
AAI clade 68-14
medoid: miga SW19B 10674 0018 idba bin 82
-
AAI clade 68-15
medoid: miga SW19B 10674 0022 idba bin 18
-
AAI clade 68-16
medoid: miga SW19B 10674 0009 idba bin 26
-
AAI clade 68-17
medoid: miga SW19B 10674 min2k bin 3497
-
AAI clade 68-18
medoid: miga SW19B 10677 min2k bin 406
-
AAI clade 68-19
medoid: miga SW19B 10677 0009 idba bin 79
-
AAI clade 68-20
medoid: miga SW19B 10676 0033 idba bin 94
-
AAI clade 68-21
medoid: miga SW19B 10677 min2k bin 2984
-
AAI clade 68-22
medoid: miga PS19A BackhedF 2015 SID350 12M bin 3
-
AAI clade 68-23
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES12 bin 7
2 datasets: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES12 bin 7 (AAI: 100.0%) and miga PS19A CM madagascar A19 01 1FE bin 12 (AAI: 68.53%)
-
AAI clade 68-24
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES18 bin 107
-
AAI clade 68-25
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES30 bin 9
-
AAI clade 68-26
medoid: miga PS19A BritoIL 2016 M1 16 ST bin 38
-
AAI clade 68-27
medoid: miga PS19A BritoIL 2016 W1 21 ST bin 5
-
AAI clade 68-28
medoid: miga PS19A BritoIL 2016 WL 37 ST bin 41
-
AAI clade 68-29
medoid: miga PS19A CM madagascar A39 01 1FE bin 27
-
AAI clade 68-30
medoid: miga PS19A CM madagascar V36 02 2FE bin 4
-
AAI clade 68-31
medoid: miga PS19A HMP 2012 SRS022609 bin 76
-
AAI clade 68-32
medoid: miga PS19A ZeeviD 2015 PNP Main 412 megahit bin 23
-
AAI clade 68-33
medoid: miga PS19A VogtmannE 2016 MMRS21365932ST 27 0 0 bin 9
-
AAI clade 68-34
medoid: miga PS19A RampelliS 2015 H10 bin 49
-
AAI clade 68-35
medoid: miga PS19A ZeeviD 2015 PNP Main 706 megahit bin 10
-
AAI clade 68-36
medoid: miga PS19A ZeeviD 2015 PNP Main 225 megahit bin 31
-
AAI clade 68-37
medoid: miga PS19A ZeeviD 2015 PNP Validation 81 megahit bin 18
-
AAI clade 68-38
medoid: miga PS19A ZeeviD 2015 PNP Main 511 megahit bin 45
-
AAI clade 68-39
medoid: miga PS19A ZeeviD 2015 PNP Main 632 megahit bin 18
-
AAI clade 68-40
medoid: miga PS19A ZeeviD 2015 PNP Main 676 megahit bin 20
-
AAI clade 68-1
medoid: asm GCA 002308495 1
-
AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
-
AAI clade 70
medoid: asm GCA 002369075 1
-
AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
-
AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
-
AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
-
AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
-
AAI clade 75
medoid: asm GCA 002294525 1
-
AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
-
AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
-
AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
-
AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
-
AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
-
AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
-
AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
-
AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
-
AAI clade 84
medoid: asm GCA 003020965 1
-
AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
-
AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
-
AAI clade 87
medoid: asm GCA 001701225 1
-
AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
-
AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
-
AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
-
AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
-
AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
-
AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1