AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: asm GCA 900155255 1
-
AAI clade 2
medoid: asm GCA 003225555 1
-
AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
-
AAI clade 4
medoid: miga BA16A LX33 339
-
AAI clade 5
medoid: asm GCA 002344625 1
-
AAI clade 6
medoid: miga ZQ19A BG 240
-
AAI clade 7
medoid: asm GCA 003220495 1
-
AAI clade 8
medoid: asm GCA 001768045 1
-
AAI clade 9
medoid: miga ZQ19A BG 239
-
AAI clade 10
medoid: asm GCA 002508675 1
-
AAI clade 11
medoid: miga PU18A 2609459660
-
AAI clade 12
medoid: asm GCA 003662385 1
-
AAI clade 13
medoid: asm GCA 002869845 2
-
AAI clade 14
medoid: miga ZQ19A BG 334
-
AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
-
AAI clade 16
medoid: asm GCA 003218215 1
-
AAI clade 17
medoid: gb PMWP00000000
-
AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
-
AAI clade 19
medoid: miga ZQ19A BG 192
-
AAI clade 20
medoid: asm GCA 003222055 1
-
AAI clade 21
medoid: asm GCA 002304435 1
-
AAI clade 22
medoid: gb PMOA00000000
-
AAI clade 23
medoid: asm GCA 001180165 1
-
AAI clade 24
medoid: asm GCA 900155275 1
-
AAI clade 25
medoid: asm GCA 003562785 1
-
AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
-
AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
-
AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
-
AAI clade 29
medoid: asm GCA 900317055 1
-
AAI clade 30
medoid: gb MERW00000000
-
AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
-
AAI clade 32
medoid: asm GCA 002320005 1
-
AAI clade 33
medoid: asm GCA 900318825 1
-
AAI clade 34
medoid: miga BA16A 35 5E
-
AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
-
AAI clade 36
medoid: asm GCA 001604115 1
-
AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
-
AAI clade 38
medoid: miga BA16A 35 12A
-
AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
-
AAI clade 40
medoid: asm GCA 002372655 1
-
AAI clade 41
medoid: miga ZQ19A BG 670
-
AAI clade 42
medoid: asm GCA 002732585 1
-
AAI clade 43
medoid: gb MFTG00000000
-
AAI clade 44
medoid: asm GCF 000217915 1
-
AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
-
AAI clade 46
medoid: asm GCA 005503595 1
-
AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
-
AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
-
AAI clade 49
medoid: asm GCA 002787475 1
-
AAI clade 50
medoid: asm GCA 002411275 1
-
AAI clade 51
medoid: asm GCA 001003965 1
-
AAI clade 52
medoid: asm GCA 900315795 1
-
AAI clade 53
medoid: asm GCA 002782265 1
-
AAI clade 54
medoid: asm GCA 002506275 1
-
AAI clade 55
medoid: asm GCA 002501805 1
-
AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
-
AAI clade 57
medoid: asm GCA 002362915 1
-
AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
-
AAI clade 59
medoid: asm GCA 002478295 1
-
AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
-
AAI clade 61
medoid: asm GCA 002373045 1
-
AAI clade 62
medoid: gb PLQF00000000
-
AAI clade 63
medoid: asm GCA 002352835 1
-
AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
-
AAI clade 64-1
medoid: asm GCA 002423585 1
-
AAI clade 64-2
medoid: asm GCA 002347365 1
-
AAI clade 64-3
medoid: asm GCA 002345925 1
-
AAI clade 64-4
medoid: asm GCA 002339355 1
-
AAI clade 64-5
medoid: asm GCA 002366545 1
1 dataset: asm GCA 002366545 1 (AAI: 100.0%)
-
AAI clade 64-6
medoid: asm GCA 002367305 1
-
AAI clade 64-7
medoid: asm GCA 002478275 1
-
AAI clade 64-8
medoid: asm GCA 002293965 1
-
AAI clade 64-9
medoid: asm GCA 002371495 1
-
AAI clade 64-10
medoid: asm GCA 002418085 1
-
AAI clade 64-11
medoid: miga PS19A XieH 2016 YSZC12003 37406 bin 6
-
AAI clade 64-12
medoid: asm GCA 002305585 1
-
AAI clade 64-13
medoid: asm GCA 002293265 1
-
AAI clade 64-14
medoid: asm GCA 002779205 1
-
AAI clade 64-15
medoid: asm GCA 001768675 1
-
AAI clade 64-16
medoid: asm GCA 001767685 1
-
AAI clade 64-17
medoid: asm GCA 003599545 1
-
AAI clade 64-18
medoid: asm GCA 003599235 1
-
AAI clade 64-19
medoid: asm GCA 003598015 1
-
AAI clade 64-20
medoid: asm GCA 900315385 1
-
AAI clade 64-21
medoid: asm GCA 900314665 1
-
AAI clade 64-22
medoid: asm GCA 900313875 1
-
AAI clade 64-23
medoid: asm GCA 003563465 1
-
AAI clade 64-24
medoid: asm GCA 001460815 1
-
AAI clade 64-25
medoid: gb PKYG00000000
-
AAI clade 64-26
medoid: gb PKWR00000000
-
AAI clade 64-27
medoid: gb PMJJ00000000
-
AAI clade 64-28
medoid: gb PMDX00000000
-
AAI clade 64-29
medoid: miga SW19B 10676 0043 idba bin 69
-
AAI clade 64-30
medoid: miga SW19B 10677 min2k bin 2295
-
AAI clade 64-31
medoid: miga SW19B 10675 0014 idba bin 62
-
AAI clade 64-32
medoid: miga SW19B 10676 min2k bin 2618
-
AAI clade 64-33
medoid: miga SW19B 10674 min2k bin 3590
-
AAI clade 64-34
medoid: miga SW19B 10677 min2k bin 3493
-
AAI clade 64-35
medoid: miga PS19A LiSS 2016 FAT 010 22 14 0 bin 60
-
AAI clade 64-36
medoid: miga SW19B 10678 min2k bin 2524
-
AAI clade 64-37
medoid: miga PS19A FengQ 2015 SID31700 bin 66
-
AAI clade 64-38
medoid: miga PS19A CM madagascar A69 01 1FE bin 3
-
AAI clade 64-39
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES21 bin 18
-
AAI clade 64-40
medoid: miga PS19A BackhedF 2015 SID626 M bin 30
-
AAI clade 64-41
medoid: miga PS19A CM madagascar A09 02 1FE bin 54
-
AAI clade 64-42
medoid: miga PS19A FengQ 2015 SID31129 bin 39
-
AAI clade 64-43
medoid: miga PS19A CM madagascar A46 01 1FE bin 16
-
AAI clade 64-44
medoid: miga PS19A XieH 2016 YSZC12003 37103 bin 68
-
AAI clade 64-45
medoid: miga PS19A FengQ 2015 SID31267 bin 75
-
AAI clade 64-46
medoid: miga PS19A CM periimplantitis SP 143SPI T016 bin 20
-
AAI clade 64-47
medoid: miga PS19A CosteaPI 2017 scavenger 11 0 0 bin 39
-
AAI clade 64-48
medoid: miga PS19A LiuW 2016 SRR3992985 bin 22
-
AAI clade 64-49
medoid: miga PS19A FengQ 2015 SID31160 bin 41
-
AAI clade 64-50
medoid: miga PS19A HMP 2012 SRS011111 bin 1
-
AAI clade 64-51
medoid: miga PS19A IjazUZ 2017 S28 a WGS megahit bin 9
-
AAI clade 64-52
medoid: miga PS19A KarlssonFH 2013 S468 bin 40
-
AAI clade 64-53
medoid: miga PS19A LiJ 2014 V1 FI25 bin 11
-
AAI clade 64-54
medoid: miga PS19A NielsenHB 2014 V1 UC14 1 bin 33
-
AAI clade 64-55
medoid: miga PS19A SchirmerM 2016 G89176 bin 11
-
AAI clade 64-56
medoid: miga PS19A XieH 2016 YSZC12003 37647 bin 57
-
AAI clade 64-57
medoid: miga PS19A ZellerG 2014 CCMD25963797ST 21 0 bin 2
-
AAI clade 64-58
medoid: asm GCA 002791875 1
-
AAI clade 64-1
medoid: asm GCA 002423585 1
-
AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
-
AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
-
AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
-
AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
-
AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
-
AAI clade 70
medoid: asm GCA 002369075 1
-
AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
-
AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
-
AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
-
AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
-
AAI clade 75
medoid: asm GCA 002294525 1
-
AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
-
AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
-
AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
-
AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
-
AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
-
AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
-
AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
-
AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
-
AAI clade 84
medoid: asm GCA 003020965 1
-
AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
-
AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
-
AAI clade 87
medoid: asm GCA 001701225 1
-
AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
-
AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
-
AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
-
AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
-
AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
-
AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1