AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: asm GCA 900155255 1
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AAI clade 2
medoid: asm GCA 003225555 1
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AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
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AAI clade 4
medoid: miga BA16A LX33 339
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AAI clade 5
medoid: asm GCA 002344625 1
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AAI clade 6
medoid: miga ZQ19A BG 240
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AAI clade 7
medoid: asm GCA 003220495 1
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AAI clade 8
medoid: asm GCA 001768045 1
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AAI clade 9
medoid: miga ZQ19A BG 239
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AAI clade 10
medoid: asm GCA 002508675 1
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AAI clade 11
medoid: miga PU18A 2609459660
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AAI clade 12
medoid: asm GCA 003662385 1
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AAI clade 13
medoid: asm GCA 002869845 2
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AAI clade 14
medoid: miga ZQ19A BG 334
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AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
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AAI clade 16
medoid: asm GCA 003218215 1
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AAI clade 17
medoid: gb PMWP00000000
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AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
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AAI clade 19
medoid: miga ZQ19A BG 192
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AAI clade 20
medoid: asm GCA 003222055 1
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AAI clade 21
medoid: asm GCA 002304435 1
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AAI clade 22
medoid: gb PMOA00000000
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AAI clade 23
medoid: asm GCA 001180165 1
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AAI clade 24
medoid: asm GCA 900155275 1
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AAI clade 25
medoid: asm GCA 003562785 1
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AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
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AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
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AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
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AAI clade 29
medoid: asm GCA 900317055 1
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AAI clade 30
medoid: gb MERW00000000
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AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
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AAI clade 32
medoid: asm GCA 002320005 1
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AAI clade 33
medoid: asm GCA 900318825 1
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AAI clade 34
medoid: miga BA16A 35 5E
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AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
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AAI clade 36
medoid: asm GCA 001604115 1
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AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
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AAI clade 38
medoid: miga BA16A 35 12A
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AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
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AAI clade 40
medoid: asm GCA 002372655 1
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AAI clade 41
medoid: miga ZQ19A BG 670
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AAI clade 42
medoid: asm GCA 002732585 1
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AAI clade 43
medoid: gb MFTG00000000
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AAI clade 44
medoid: asm GCF 000217915 1
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AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
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AAI clade 46
medoid: asm GCA 005503595 1
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AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
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AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
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AAI clade 49
medoid: asm GCA 002787475 1
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AAI clade 50
medoid: asm GCA 002411275 1
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AAI clade 51
medoid: asm GCA 001003965 1
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AAI clade 52
medoid: asm GCA 900315795 1
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AAI clade 53
medoid: asm GCA 002782265 1
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AAI clade 53-1
medoid: asm GCA 001872305 1
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AAI clade 53-2
medoid: asm GCA 001872405 1
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AAI clade 53-3
medoid: asm GCA 001819175 1
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AAI clade 53-4
medoid: asm GCA 002782265 1
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AAI clade 53-4-1
medoid: asm GCA 002782265 1
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AAI clade 53-4-1-1
medoid: asm GCA 002782265 1
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AAI clade 53-4-1-1-1
medoid: asm GCA 002782265 1
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AAI clade 53-4-1-1-1-1
medoid: asm GCA 002782265 1
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AAI clade 53-4-1-1-1-1-1
medoid: asm GCA 003563095 1
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AAI clade 53-4-1-1-1-1-2
medoid: asm GCA 001302985 1
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AAI clade 53-4-1-1-1-1-3
medoid: asm GCA 002434805 1
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AAI clade 53-4-1-1-1-1-4
medoid: asm GCA 001819145 1
1 dataset: asm GCA 001819145 1 (AAI: 100.0%)
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AAI clade 53-4-1-1-1-1-5
medoid: asm GCA 001821455 1
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AAI clade 53-4-1-1-1-1-6
medoid: asm GCA 002782265 1
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AAI clade 53-4-1-1-1-1-7
medoid: asm GCA 003566555 1
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AAI clade 53-4-1-1-1-1-8
medoid: asm GCA 003647625 1
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AAI clade 53-4-1-1-1-1-9
medoid: asm GCA 002772015 1
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AAI clade 53-4-1-1-1-1-10
medoid: asm GCA 002780915 1
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AAI clade 53-4-1-1-1-1-11
medoid: asm GCA 002781305 1
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AAI clade 53-4-1-1-1-1-12
medoid: asm GCA 002781285 1
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AAI clade 53-4-1-1-1-1-13
medoid: asm GCA 002780635 1
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AAI clade 53-4-1-1-1-1-14
medoid: asm GCA 002774615 1
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AAI clade 53-4-1-1-1-1-15
medoid: asm GCA 002773075 1
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AAI clade 53-4-1-1-1-1-16
medoid: asm GCA 002788455 1
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AAI clade 53-4-1-1-1-1-17
medoid: asm GCA 002789345 1
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AAI clade 53-4-1-1-1-1-1
medoid: asm GCA 003563095 1
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AAI clade 53-4-1-1-1-2
medoid: asm GCA 002772035 1
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AAI clade 53-4-1-1-1-1
medoid: asm GCA 002782265 1
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AAI clade 53-4-1-1-2
medoid: asm GCA 001821485 1
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AAI clade 53-4-1-1-3
medoid: gb MHMK00000000
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AAI clade 53-4-1-1-4
medoid: gb MHTQ00000000
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AAI clade 53-4-1-1-5
medoid: asm GCA 002793605 1
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AAI clade 53-4-1-1-1
medoid: asm GCA 002782265 1
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AAI clade 53-4-1-2
medoid: asm GCA 002774515 1
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AAI clade 53-4-1-3
medoid: asm GCA 002774495 1
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AAI clade 53-4-1-1
medoid: asm GCA 002782265 1
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AAI clade 53-4-2
medoid: asm GCA 002771495 1
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AAI clade 53-4-3
medoid: miga WD15A P1181 102 57
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AAI clade 53-4-1
medoid: asm GCA 002782265 1
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AAI clade 53-5
medoid: asm GCA 001784645 1
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AAI clade 53-6
medoid: asm GCA 002340425 1
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AAI clade 53-7
medoid: asm GCA 002329255 1
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AAI clade 53-8
medoid: miga WD15A P1163 103 0
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AAI clade 53-9
medoid: asm GCA 002419265 1
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AAI clade 53-10
medoid: asm GCA 002423555 1
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AAI clade 53-11
medoid: miga CB19A Bin 5
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AAI clade 53-12
medoid: gb MEYM00000000
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AAI clade 53-13
medoid: asm GCA 001775785 1
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AAI clade 53-14
medoid: asm GCA 001819605 1
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AAI clade 53-15
medoid: asm GCA 002773725 1
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AAI clade 53-16
medoid: asm GCA 001004115 1
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AAI clade 53-17
medoid: asm GCA 001779845 1
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AAI clade 53-18
medoid: asm GCA 001780535 1
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AAI clade 53-19
medoid: asm GCA 001778435 1
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AAI clade 53-20
medoid: asm GCA 001817875 1
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AAI clade 53-21
medoid: asm GCA 001818705 1
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AAI clade 53-22
medoid: asm GCA 001003475 1
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AAI clade 53-23
medoid: asm GCA 001779505 1
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AAI clade 53-24
medoid: asm GCA 001001115 1
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AAI clade 53-25
medoid: asm GCA 003598915 1
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AAI clade 53-26
medoid: asm GCA 002790675 1
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AAI clade 53-27
medoid: asm GCA 001819235 1
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AAI clade 53-28
medoid: asm GCA 002774705 1
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AAI clade 53-29
medoid: asm GCA 001821615 1
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AAI clade 53-30
medoid: asm GCA 001819435 1
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AAI clade 53-31
medoid: asm GCA 002796005 1
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AAI clade 53-32
medoid: asm GCA 002780785 1
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AAI clade 53-33
medoid: asm GCA 001819815 1
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AAI clade 53-34
medoid: asm GCA 001821715 1
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AAI clade 53-35
medoid: asm GCA 001821805 1
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AAI clade 53-36
medoid: asm GCA 001821885 1
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AAI clade 53-37
medoid: asm GCA 001820195 1
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AAI clade 53-38
medoid: asm GCA 001821995 1
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AAI clade 53-39
medoid: asm GCA 001822215 1
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AAI clade 53-40
medoid: asm GCA 001004435 1
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AAI clade 53-41
medoid: asm GCA 001820775 1
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AAI clade 53-42
medoid: asm GCA 001820755 1
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AAI clade 53-43
medoid: asm GCA 001822475 1
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AAI clade 53-44
medoid: asm GCA 001822855 1
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AAI clade 53-45
medoid: gb MHSW00000000
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AAI clade 53-46
medoid: asm GCA 002792555 1
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AAI clade 53-47
medoid: asm GCA 001003785 1
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AAI clade 53-48
medoid: asm GCA 001825005 1
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AAI clade 53-49
medoid: asm GCA 000992935 1
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AAI clade 53-50
medoid: gb MGIP00000000
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AAI clade 53-51
medoid: asm GCA 002791995 1
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AAI clade 53-52
medoid: gb MGIT00000000
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AAI clade 53-53
medoid: gb MGJR00000000
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AAI clade 53-54
medoid: asm GCA 001794025 1
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AAI clade 53-55
medoid: asm GCA 001794125 1
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AAI clade 53-56
medoid: gb MGKS00000000
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AAI clade 53-57
medoid: asm GCA 001794455 1
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AAI clade 53-58
medoid: asm GCA 001824325 1
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AAI clade 53-59
medoid: asm GCA 003599335 1
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AAI clade 53-60
medoid: asm GCA 000989335 1
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AAI clade 53-61
medoid: asm GCA 000991445 1
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AAI clade 53-62
medoid: asm GCA 000992445 2
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AAI clade 53-63
medoid: asm GCA 000993525 1
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AAI clade 53-64
medoid: asm GCA 000993585 1
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AAI clade 53-65
medoid: asm GCA 000993645 1
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AAI clade 53-66
medoid: gb MHHX00000000
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AAI clade 53-67
medoid: gb MFSK00000000
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AAI clade 53-68
medoid: asm GCA 003554445 1
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AAI clade 53-69
medoid: asm GCA 003560725 1
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AAI clade 53-70
medoid: asm GCA 003553285 1
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AAI clade 53-71
medoid: miga SS18A Bin 22 2 contigs
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AAI clade 53-72
medoid: asm GCA 003556525 1
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AAI clade 53-73
medoid: asm GCA 003560605 1
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AAI clade 53-74
medoid: asm GCA 003559065 1
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AAI clade 53-75
medoid: asm GCA 003557585 1
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AAI clade 53-76
medoid: asm GCA 003647665 1
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AAI clade 53-77
medoid: asm GCA 005239765 1
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AAI clade 53-78
medoid: gb ASKV00000000
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AAI clade 53-79
medoid: asm GCA 002796205 1
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AAI clade 53-80
medoid: gb MHNM00000000
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AAI clade 53-81
medoid: asm GCA 002782575 1
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AAI clade 53-82
medoid: asm GCA 002773435 1
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AAI clade 53-83
medoid: asm GCA 002793835 1
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AAI clade 53-84
medoid: asm GCA 002774055 1
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AAI clade 53-85
medoid: asm GCA 002780045 1
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AAI clade 53-86
medoid: asm GCA 002773545 1
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AAI clade 53-87
medoid: asm GCA 002792895 1
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AAI clade 53-88
medoid: asm GCA 002792135 1
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AAI clade 53-1
medoid: asm GCA 001872305 1
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AAI clade 54
medoid: asm GCA 002506275 1
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AAI clade 55
medoid: asm GCA 002501805 1
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AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
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AAI clade 57
medoid: asm GCA 002362915 1
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AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
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AAI clade 59
medoid: asm GCA 002478295 1
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AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
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AAI clade 61
medoid: asm GCA 002373045 1
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AAI clade 62
medoid: gb PLQF00000000
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AAI clade 63
medoid: asm GCA 002352835 1
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AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
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AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
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AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
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AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
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AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
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AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
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AAI clade 70
medoid: asm GCA 002369075 1
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AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
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AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
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AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
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AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
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AAI clade 75
medoid: asm GCA 002294525 1
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AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
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AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
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AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
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AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
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AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
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AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
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AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
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AAI clade 84
medoid: asm GCA 003020965 1
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AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
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AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
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AAI clade 87
medoid: asm GCA 001701225 1
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AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
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AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
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AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
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AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
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AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
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AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1