AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: asm GCA 900155255 1
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AAI clade 2
medoid: asm GCA 003225555 1
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AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
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AAI clade 4
medoid: miga BA16A LX33 339
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AAI clade 5
medoid: asm GCA 002344625 1
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AAI clade 6
medoid: miga ZQ19A BG 240
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AAI clade 7
medoid: asm GCA 003220495 1
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AAI clade 8
medoid: asm GCA 001768045 1
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AAI clade 9
medoid: miga ZQ19A BG 239
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AAI clade 10
medoid: asm GCA 002508675 1
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AAI clade 11
medoid: miga PU18A 2609459660
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AAI clade 12
medoid: asm GCA 003662385 1
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AAI clade 13
medoid: asm GCA 002869845 2
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AAI clade 14
medoid: miga ZQ19A BG 334
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AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
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AAI clade 16
medoid: asm GCA 003218215 1
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AAI clade 17
medoid: gb PMWP00000000
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AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
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AAI clade 19
medoid: miga ZQ19A BG 192
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AAI clade 20
medoid: asm GCA 003222055 1
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AAI clade 21
medoid: asm GCA 002304435 1
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AAI clade 22
medoid: gb PMOA00000000
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AAI clade 23
medoid: asm GCA 001180165 1
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AAI clade 24
medoid: asm GCA 900155275 1
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AAI clade 25
medoid: asm GCA 003562785 1
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AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
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AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
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AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
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AAI clade 29
medoid: asm GCA 900317055 1
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AAI clade 30
medoid: gb MERW00000000
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AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
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AAI clade 32
medoid: asm GCA 002320005 1
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AAI clade 33
medoid: asm GCA 900318825 1
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AAI clade 34
medoid: miga BA16A 35 5E
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AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
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AAI clade 36
medoid: asm GCA 001604115 1
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AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
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AAI clade 38
medoid: miga BA16A 35 12A
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AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
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AAI clade 40
medoid: asm GCA 002372655 1
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AAI clade 41
medoid: miga ZQ19A BG 670
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AAI clade 42
medoid: asm GCA 002732585 1
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AAI clade 43
medoid: gb MFTG00000000
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AAI clade 44
medoid: asm GCF 000217915 1
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AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
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AAI clade 46
medoid: asm GCA 005503595 1
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AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
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AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
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AAI clade 49
medoid: asm GCA 002787475 1
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AAI clade 49-1
medoid: asm GCA 001001155 1
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AAI clade 49-2
medoid: asm GCA 000999715 1
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AAI clade 49-3
medoid: asm GCA 001871445 1
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AAI clade 49-4
medoid: asm GCA 002327545 1
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AAI clade 49-5
medoid: asm GCA 000997945 1
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AAI clade 49-6
medoid: asm GCA 002869235 1
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AAI clade 49-7
medoid: asm GCA 002869165 1
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AAI clade 49-8
medoid: asm GCA 001784405 1
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AAI clade 49-9
medoid: asm GCA 001791745 1
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AAI clade 49-10
medoid: asm GCA 002306385 1
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AAI clade 49-11
medoid: asm GCA 002433965 1
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AAI clade 49-12
medoid: gb MFRV00000000
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AAI clade 49-13
medoid: asm GCA 002328565 1
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AAI clade 49-14
medoid: asm GCA 002352465 1
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AAI clade 49-15
medoid: asm GCA 002778535 1
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AAI clade 49-16
medoid: asm GCA 002339755 1
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AAI clade 49-17
medoid: asm GCA 002402995 1
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AAI clade 49-18
medoid: asm GCA 002085145 1
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AAI clade 49-19
medoid: asm GCA 001817345 1
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AAI clade 49-20
medoid: gb PLYC00000000
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AAI clade 49-21
medoid: asm GCA 001817065 1
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AAI clade 49-22
medoid: asm GCA 001817115 1
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AAI clade 49-23
medoid: asm GCA 001817265 1
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AAI clade 49-24
medoid: asm GCA 001817385 1
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AAI clade 49-25
medoid: asm GCA 002773855 1
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AAI clade 49-26
medoid: asm GCA 001777525 1
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AAI clade 49-27
medoid: asm GCA 001779915 1
5 datasets: asm GCA 001779915 1 (AAI: 100.0%), asm GCA 001777655 1 (AAI: 54.2%), asm GCA 001777785 1 (AAI: 54.26%), gb MFEL00000000 (AAI: 52.04%), and gb MFFA00000000 (AAI: 53.74%)
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AAI clade 49-28
medoid: asm GCA 001777735 1
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AAI clade 49-29
medoid: asm GCA 001779955 1
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AAI clade 49-30
medoid: asm GCA 001780195 1
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AAI clade 49-31
medoid: asm GCA 002773575 1
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AAI clade 49-32
medoid: asm GCA 002787475 1
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AAI clade 49-33
medoid: asm GCA 002773615 1
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AAI clade 49-34
medoid: asm GCA 002773665 1
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AAI clade 49-35
medoid: asm GCA 000993485 1
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AAI clade 49-36
medoid: asm GCA 001780335 1
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AAI clade 49-37
medoid: asm GCA 001818105 1
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AAI clade 49-38
medoid: asm GCA 001000795 1
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AAI clade 49-39
medoid: asm GCA 001818775 1
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AAI clade 49-40
medoid: asm GCA 001818785 1
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AAI clade 49-41
medoid: asm GCA 002778525 1
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AAI clade 49-42
medoid: gb MHKK00000000
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AAI clade 49-43
medoid: asm GCA 001783595 1
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AAI clade 49-44
medoid: gb MFQS00000000
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AAI clade 49-45
medoid: asm GCA 001004165 1
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AAI clade 49-46
medoid: asm GCA 001782815 1
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AAI clade 49-47
medoid: asm GCA 002778445 1
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AAI clade 49-48
medoid: miga WD15A P1181 102 96
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AAI clade 49-49
medoid: asm GCA 000995575 1
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AAI clade 49-50
medoid: asm GCA 000996735 1
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AAI clade 49-51
medoid: asm GCA 001784435 1
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AAI clade 49-52
medoid: asm GCA 001791645 1
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AAI clade 49-53
medoid: asm GCA 001791275 1
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AAI clade 49-54
medoid: asm GCA 001791305 1
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AAI clade 49-55
medoid: asm GCA 001791325 1
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AAI clade 49-56
medoid: asm GCA 001001705 1
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AAI clade 49-57
medoid: gb MGEU00000000
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AAI clade 49-58
medoid: asm GCA 001791475 1
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AAI clade 49-59
medoid: asm GCA 002774875 1
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AAI clade 49-60
medoid: asm GCA 002774575 1
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AAI clade 49-61
medoid: asm GCA 003599635 1
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AAI clade 49-62
medoid: asm GCA 003022345 1
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AAI clade 49-63
medoid: asm GCA 000990595 1
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AAI clade 49-64
medoid: asm GCA 000992395 1
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AAI clade 49-65
medoid: asm GCA 000995135 1
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AAI clade 49-66
medoid: asm GCA 000992775 1
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AAI clade 49-67
medoid: asm GCA 002793515 1
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AAI clade 49-68
medoid: asm GCA 001002705 1
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AAI clade 49-69
medoid: asm GCA 002772105 1
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AAI clade 49-70
medoid: asm GCA 000996715 1
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AAI clade 49-71
medoid: asm GCA 002788995 1
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AAI clade 49-72
medoid: asm GCA 000999315 1
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AAI clade 49-73
medoid: asm GCA 001000505 1
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AAI clade 49-74
medoid: asm GCA 001001655 1
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AAI clade 49-75
medoid: asm GCA 001004295 1
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AAI clade 49-76
medoid: asm GCA 001004885 1
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AAI clade 49-77
medoid: gb MGDY00000000
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AAI clade 49-78
medoid: asm GCA 004374725 1
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AAI clade 49-79
medoid: asm GCA 003560255 1
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AAI clade 49-80
medoid: asm GCA 003551285 1
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AAI clade 49-81
medoid: asm GCA 003557025 1
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AAI clade 49-82
medoid: asm GCA 005239865 1
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AAI clade 49-83
medoid: asm GCA 005239895 1
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AAI clade 49-84
medoid: gb ASNX00000000
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AAI clade 49-85
medoid: gb MHKB00000000
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AAI clade 49-86
medoid: gb MFSE00000000
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AAI clade 49-87
medoid: gb MGEG00000000
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AAI clade 49-88
medoid: asm GCA 002778645 1
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AAI clade 49-89
medoid: asm GCA 002788195 1
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AAI clade 49-90
medoid: asm GCA 002773845 1
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AAI clade 49-91
medoid: miga WD15A P1163 102 19
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AAI clade 49-92
medoid: asm GCA 002784945 1
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AAI clade 49-93
medoid: asm GCA 002774585 1
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AAI clade 49-94
medoid: asm GCA 002785295 1
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AAI clade 49-95
medoid: asm GCA 002772895 1
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AAI clade 49-96
medoid: asm GCA 002771165 1
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AAI clade 49-97
medoid: asm GCA 002792575 1
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AAI clade 49-98
medoid: miga WD15A P1181 101 88
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AAI clade 49-99
medoid: miga WD15A P1181 102 10
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AAI clade 49-100
medoid: miga WD15A P1181 102 90
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AAI clade 49-1
medoid: asm GCA 001001155 1
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AAI clade 50
medoid: asm GCA 002411275 1
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AAI clade 51
medoid: asm GCA 001003965 1
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AAI clade 52
medoid: asm GCA 900315795 1
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AAI clade 53
medoid: asm GCA 002782265 1
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AAI clade 54
medoid: asm GCA 002506275 1
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AAI clade 55
medoid: asm GCA 002501805 1
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AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
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AAI clade 57
medoid: asm GCA 002362915 1
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AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
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AAI clade 59
medoid: asm GCA 002478295 1
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AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
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AAI clade 61
medoid: asm GCA 002373045 1
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AAI clade 62
medoid: gb PLQF00000000
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AAI clade 63
medoid: asm GCA 002352835 1
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AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
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AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
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AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
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AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
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AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
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AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
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AAI clade 70
medoid: asm GCA 002369075 1
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AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
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AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
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AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
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AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
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AAI clade 75
medoid: asm GCA 002294525 1
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AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
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AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
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AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
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AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
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AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
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AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
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AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
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AAI clade 84
medoid: asm GCA 003020965 1
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AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
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AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
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AAI clade 87
medoid: asm GCA 001701225 1
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AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
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AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
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AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
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AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
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AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
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AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1