AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: asm GCA 900155255 1
  • AAI clade 2 medoid: asm GCA 003225555 1
  • AAI clade 3 medoid: miga PS19A HMP 2012 SRS017439 bin 51
  • AAI clade 4 medoid: miga BA16A LX33 339
  • AAI clade 5 medoid: asm GCA 002344625 1
  • AAI clade 6 medoid: miga ZQ19A BG 240
  • AAI clade 7 medoid: asm GCA 003220495 1
  • AAI clade 8 medoid: asm GCA 001768045 1
  • AAI clade 9 medoid: miga ZQ19A BG 239
  • AAI clade 10 medoid: asm GCA 002508675 1
  • AAI clade 11 medoid: miga PU18A 2609459660
  • AAI clade 12 medoid: asm GCA 003662385 1
  • AAI clade 13 medoid: asm GCA 002869845 2
  • AAI clade 14 medoid: miga ZQ19A BG 334
  • AAI clade 15 medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
  • AAI clade 16 medoid: asm GCA 003218215 1
  • AAI clade 17 medoid: gb PMWP00000000
  • AAI clade 18 medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
  • AAI clade 19 medoid: miga ZQ19A BG 192
  • AAI clade 20 medoid: asm GCA 003222055 1
  • AAI clade 21 medoid: asm GCA 002304435 1
  • AAI clade 22 medoid: gb PMOA00000000
  • AAI clade 23 medoid: asm GCA 001180165 1
  • AAI clade 24 medoid: asm GCA 900155275 1
  • AAI clade 25 medoid: asm GCA 003562785 1
  • AAI clade 26 medoid: miga PS19A FengQ 2015 SID531281 bin 23
  • AAI clade 27 medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
  • AAI clade 28 medoid: miga PS19A CM madagascar A27 02 1FE bin 15
  • AAI clade 29 medoid: asm GCA 900317055 1
  • AAI clade 30 medoid: gb MERW00000000
  • AAI clade 31 medoid: miga PS19A HMP 2012 SRS011126 bin 64
  • AAI clade 32 medoid: asm GCA 002320005 1
  • AAI clade 33 medoid: asm GCA 900318825 1
  • AAI clade 34 medoid: miga BA16A 35 5E
  • AAI clade 35 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
  • AAI clade 36 medoid: asm GCA 001604115 1
  • AAI clade 37 medoid: miga SW19B 10676 0045 idba bin 101
  • AAI clade 38 medoid: miga BA16A 35 12A
  • AAI clade 39 medoid: miga SW19B 10678 0025 idba bin 69
  • AAI clade 40 medoid: asm GCA 002372655 1
  • AAI clade 41 medoid: miga ZQ19A BG 670
  • AAI clade 42 medoid: asm GCA 002732585 1
  • AAI clade 43 medoid: gb MFTG00000000
  • AAI clade 44 medoid: asm GCF 000217915 1
  • AAI clade 45 medoid: miga SW19B 10676 0006 idba bin 64
  • AAI clade 46 medoid: asm GCA 005503595 1
    • AAI clade 46-1 medoid: asm GCA 003864575 1
    • AAI clade 46-2 medoid: asm GCA 003973615 1
    • AAI clade 46-3 medoid: asm GCA 002868815 1
    • AAI clade 46-4 medoid: asm GCF 000808615 1
    • AAI clade 46-5 medoid: asm GCA 002339005 1
    • AAI clade 46-6 medoid: asm GCA 002321695 1
    • AAI clade 46-7 medoid: asm GCA 002294395 1
    • AAI clade 46-8 medoid: asm GCA 002321135 1
    • AAI clade 46-9 medoid: miga PS19A QinJ 2012 CON 068 bin 35
    • AAI clade 46-10 medoid: asm GCA 002367185 1
    • AAI clade 46-11 medoid: asm GCA 002388125 1
    • AAI clade 46-12 medoid: asm GCA 002364495 1
    • AAI clade 46-13 medoid: asm GCA 002359495 1
    • AAI clade 46-14 medoid: asm GCA 002365575 1
    • AAI clade 46-15 medoid: asm GCA 002377245 1
    • AAI clade 46-16 medoid: asm GCA 002482285 1
    • AAI clade 46-17 medoid: asm GCA 002380895 1
    • AAI clade 46-18 medoid: asm GCA 002414345 1
    • AAI clade 46-19 medoid: asm GCA 002421005 1
    • AAI clade 46-20 medoid: asm GCA 002418325 1
    • AAI clade 46-21 medoid: miga PS19A FerrettiP 2018 CA C10035IS2913FE t4M16 bin 3
    • AAI clade 46-22 medoid: asm GCA 002435565 1
    • AAI clade 46-23 medoid: asm GCA 002415165 1
    • AAI clade 46-24 medoid: asm GCA 002316485 1
    • AAI clade 46-25 medoid: miga PS19A BackhedF 2015 SID238 4M bin 2
    • AAI clade 46-26 medoid: asm GCA 002364475 1
    • AAI clade 46-27 medoid: asm GCA 002386635 1
    • AAI clade 46-28 medoid: asm GCA 002360945 1
    • AAI clade 46-29 medoid: asm GCA 002341985 1
    • AAI clade 46-30 medoid: asm GCA 002469605 1
    • AAI clade 46-31 medoid: asm GCA 002454305 1
    • AAI clade 46-32 medoid: asm GCA 002337805 1
    • AAI clade 46-33 medoid: asm GCA 002365015 1
    • AAI clade 46-34 medoid: asm GCA 002389975 1
    • AAI clade 46-35 medoid: asm GCA 002430315 1
    • AAI clade 46-36 medoid: asm GCA 002434205 1
    • AAI clade 46-37 medoid: asm GCA 002470465 1
    • AAI clade 46-38 medoid: asm GCA 002364645 1
    • AAI clade 46-39 medoid: miga PS19A HeQ 2017 SZAXPI029545 129 bin 16
    • AAI clade 46-40 medoid: asm GCA 002416295 1
    • AAI clade 46-41 medoid: asm GCA 002381885 1
    • AAI clade 46-42 medoid: asm GCA 002325865 1
    • AAI clade 46-43 medoid: asm GCA 002413945 1
    • AAI clade 46-44 medoid: asm GCA 002394925 1
    • AAI clade 46-45 medoid: asm GCA 002345795 1
    • AAI clade 46-46 medoid: miga PS19A DavidLA 2015 LD Run2 05 bin 3
    • AAI clade 46-47 medoid: asm GCA 002342735 1
    • AAI clade 46-48 medoid: asm GCA 002342685 1
    • AAI clade 46-49 medoid: asm GCA 002084455 1
    • AAI clade 46-50 medoid: asm GCA 004349695 1
      2 datasets: asm GCA 004349695 1 (AAI: 100.0%) and miga PS19A BackhedF 2015 SID640 4M bin 16 (AAI: 95.96%)
    • AAI clade 46-51 medoid: miga DE18A TARA PSE MAG 00128
    • AAI clade 46-52 medoid: miga SW19B 10674 0017 idba bin 113
    • AAI clade 46-53 medoid: miga ZQ19A BG 157
    • AAI clade 46-54 medoid: miga ZQ19A BG 159
    • AAI clade 46-55 medoid: miga ZQ19A BG 160
    • AAI clade 46-56 medoid: miga ZQ19A BG 214
    • AAI clade 46-57 medoid: miga ZQ19A BG 325
    • AAI clade 46-58 medoid: miga ZQ19A BG 610
    • AAI clade 46-59 medoid: miga ZQ19A BG 614
    • AAI clade 46-60 medoid: miga ZQ19A BG 615
    • AAI clade 46-61 medoid: miga ZQ19A BG 618
    • AAI clade 46-62 medoid: miga ZQ19A BG 650
    • AAI clade 46-63 medoid: miga ZQ19A BG 664
    • AAI clade 46-64 medoid: miga PS19A CosteaPI 2017 SID713B012 11 0 0 bin 21
    • AAI clade 46-65 medoid: miga PS19A DavidLA 2015 LD Run2 19 bin 10
    • AAI clade 46-66 medoid: miga PS19A FerrettiP 2018 CA C10019IS2329FE t4M15 bin 3
    • AAI clade 46-67 medoid: miga PS19A FerrettiP 2018 CA C10029IS2503FE t3M15 bin 8
    • AAI clade 46-68 medoid: miga PS19A QinN 2014 LD 98 bin 35
    • AAI clade 46-69 medoid: miga PS19A HeQ 2017 RSZAXPI003062 102 bin 8
    • AAI clade 46-70 medoid: miga PS19A HeQ 2017 SZAXPI029476 50 bin 9
    • AAI clade 46-71 medoid: miga PS19A LeChatelierE 2013 MH0321 bin 27
    • AAI clade 46-72 medoid: miga PS19A LeChatelierE 2013 MH0432 bin 20
    • AAI clade 46-73 medoid: miga PS19A LiJ 2017 H2M513938 bin 79
    • AAI clade 46-74 medoid: miga PS19A LiuW 2016 SRR3993058 bin 15
    • AAI clade 46-75 medoid: miga PS19A QinJ 2012 T2D 045 bin 7
    • AAI clade 46-76 medoid: miga PS19A VatanenT 2016 G80472 bin 3
    • AAI clade 46-77 medoid: miga PS19A VogtmannE 2016 MMRS86168210ST 27 0 0 bin 16
  • AAI clade 47 medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
  • AAI clade 48 medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
  • AAI clade 49 medoid: asm GCA 002787475 1
  • AAI clade 50 medoid: asm GCA 002411275 1
  • AAI clade 51 medoid: asm GCA 001003965 1
  • AAI clade 52 medoid: asm GCA 900315795 1
  • AAI clade 53 medoid: asm GCA 002782265 1
  • AAI clade 54 medoid: asm GCA 002506275 1
  • AAI clade 55 medoid: asm GCA 002501805 1
  • AAI clade 56 medoid: miga PS19A HMP 2012 SRS024289 bin 35
  • AAI clade 57 medoid: asm GCA 002362915 1
  • AAI clade 58 medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
  • AAI clade 59 medoid: asm GCA 002478295 1
  • AAI clade 60 medoid: miga PS19A HMP 2012 SRS019127 bin 5
  • AAI clade 61 medoid: asm GCA 002373045 1
  • AAI clade 62 medoid: gb PLQF00000000
  • AAI clade 63 medoid: asm GCA 002352835 1
  • AAI clade 64 medoid: miga PS19A FengQ 2015 SID31700 bin 66
  • AAI clade 65 medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
  • AAI clade 66 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
  • AAI clade 67 medoid: miga SW19B 10678 0003 idba bin 42
  • AAI clade 68 medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
  • AAI clade 69 medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
  • AAI clade 70 medoid: asm GCA 002369075 1
  • AAI clade 71 medoid: miga SW19B 10675 0017 idba bin 79
  • AAI clade 72 medoid: miga PS19A CM madagascar V53 02 1FE bin 36
  • AAI clade 73 medoid: miga PS19A RampelliS 2015 H1 bin 24
  • AAI clade 74 medoid: miga PS19A HMP 2012 SRS024138 bin 26
  • AAI clade 75 medoid: asm GCA 002294525 1
  • AAI clade 76 medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
  • AAI clade 77 medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
  • AAI clade 78 medoid: miga SW19B 10677 0035 idba bin 49
  • AAI clade 79 medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
  • AAI clade 80 medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
  • AAI clade 81 medoid: miga PS19A OhJ 2014 MET0095 bin 1
  • AAI clade 82 medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
  • AAI clade 83 medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
  • AAI clade 84 medoid: asm GCA 003020965 1
  • AAI clade 85 medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
  • AAI clade 86 medoid: miga PS19A HMP 2012 SRS023595 bin 63
  • AAI clade 87 medoid: asm GCA 001701225 1
  • AAI clade 88 medoid: miga SW19B 10676 0021 idba bin 107
  • AAI clade 89 medoid: miga SW19B 10678 0026 idba bin 16
  • AAI clade 90 medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
  • AAI clade 91 medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
  • AAI clade 92 medoid: miga SW19B 10674 0007 idba bin 173
  • AAI clade 93 medoid: miga PS19A VatanenT 2016 G80490 bin 1