AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: asm GCA 900155255 1
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AAI clade 2
medoid: asm GCA 003225555 1
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AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
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AAI clade 4
medoid: miga BA16A LX33 339
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AAI clade 5
medoid: asm GCA 002344625 1
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AAI clade 6
medoid: miga ZQ19A BG 240
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AAI clade 7
medoid: asm GCA 003220495 1
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AAI clade 8
medoid: asm GCA 001768045 1
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AAI clade 9
medoid: miga ZQ19A BG 239
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AAI clade 10
medoid: asm GCA 002508675 1
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AAI clade 11
medoid: miga PU18A 2609459660
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AAI clade 12
medoid: asm GCA 003662385 1
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AAI clade 13
medoid: asm GCA 002869845 2
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AAI clade 14
medoid: miga ZQ19A BG 334
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AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
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AAI clade 16
medoid: asm GCA 003218215 1
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AAI clade 17
medoid: gb PMWP00000000
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AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
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AAI clade 19
medoid: miga ZQ19A BG 192
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AAI clade 20
medoid: asm GCA 003222055 1
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AAI clade 21
medoid: asm GCA 002304435 1
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AAI clade 22
medoid: gb PMOA00000000
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AAI clade 23
medoid: asm GCA 001180165 1
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AAI clade 24
medoid: asm GCA 900155275 1
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AAI clade 25
medoid: asm GCA 003562785 1
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AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
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AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
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AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
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AAI clade 28-1
medoid: asm GCA 002425935 1
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AAI clade 28-2
medoid: asm GCA 002305545 1
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AAI clade 28-3
medoid: asm GCA 001603525 1
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AAI clade 28-4
medoid: asm GCA 001602865 1
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AAI clade 28-5
medoid: miga SW19B 10674 0015 idba bin 81
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AAI clade 28-6
medoid: miga SW19B 10677 0052 idba bin 161
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AAI clade 28-7
medoid: miga SW19B 10676 0049 idba bin 74
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AAI clade 28-8
medoid: asm GCA 002309795 1
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AAI clade 28-9
medoid: asm GCA 002308935 1
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AAI clade 28-10
medoid: asm GCA 002376715 1
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AAI clade 28-11
medoid: miga PS19A BritoIL 2016 M1 29 ST bin 46
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AAI clade 28-12
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
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AAI clade 28-13
medoid: asm GCA 002351585 1
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AAI clade 28-14
medoid: asm GCA 002317435 1
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AAI clade 28-15
medoid: asm GCA 002314885 1
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AAI clade 28-16
medoid: asm GCA 002315995 1
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AAI clade 28-17
medoid: asm GCA 002314725 1
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AAI clade 28-18
medoid: miga SW19B 10676 0048 idba bin 190
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AAI clade 28-19
medoid: miga SW19B 10677 0027 idba bin 132
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AAI clade 28-20
medoid: asm GCA 002358965 1
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AAI clade 28-21
medoid: miga SW19B 10675 0021 idba bin 39
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AAI clade 28-22
medoid: miga SW19B 10675 0049 idba bin 92
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AAI clade 28-23
medoid: miga SW19B 10675 0025 idba bin 4
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AAI clade 28-24
medoid: asm GCA 900322025 1
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AAI clade 28-25
medoid: asm GCA 900316945 1
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AAI clade 28-26
medoid: asm GCA 002428635 1
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AAI clade 28-27
medoid: miga SW19B 10677 min2k bin 3037
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AAI clade 28-28
medoid: asm GCA 002440085 1
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AAI clade 28-29
medoid: asm GCA 002438805 1
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AAI clade 28-30
medoid: miga PS19A BritoIL 2016 WL 20 ST bin 39
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AAI clade 28-31
medoid: miga PS19A HMP 2012 SRS016095 bin 12
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AAI clade 28-32
medoid: asm GCA 002481205 1
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AAI clade 28-33
medoid: asm GCA 001769195 1
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AAI clade 28-34
medoid: miga SW19B 10675 0019 idba bin 71
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AAI clade 28-35
medoid: miga SW19B 10677 0008 idba bin 149
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AAI clade 28-36
medoid: miga SW19B 10677 0034 idba bin 44
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AAI clade 28-37
medoid: miga SW19B 10677 0015 idba bin 23
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AAI clade 28-37-1
medoid: miga SW19B 10677 0011 idba bin 107
8 datasets: asm GCA 900320365 1 (AAI: 80.57%), asm GCA 900313275 1 (AAI: 72.69%), miga SW19B 10676 0038 idba bin 1 (AAI: 71.84%), miga SW19B 10677 0011 idba bin 107 (AAI: 100.0%), miga SW19B 10677 0015 idba bin 23 (AAI: 85.39%), miga SW19B 10572 0034 idba bin 32 (AAI: 76.38%), miga SW19B 10674 0005 idba bin 46 (AAI: 75.23%), and miga SW19B 10677 0009 idba bin 9 (AAI: 72.22%)
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AAI clade 28-37-2
medoid: miga SW19B 10677 min2k bin 1402
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AAI clade 28-37-3
medoid: miga SW19B 10677 min2k bin 3564
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AAI clade 28-37-4
medoid: miga SW19B 10677 0048 idba bin 78
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AAI clade 28-37-5
medoid: miga SW19B 10572 0034 idba bin 14
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AAI clade 28-37-1
medoid: miga SW19B 10677 0011 idba bin 107
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AAI clade 28-38
medoid: asm GCA 900320385 1
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AAI clade 28-39
medoid: miga SW19B 10677 0009 idba bin 120
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AAI clade 28-40
medoid: miga SW19B 10676 0043 idba bin 31
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AAI clade 28-41
medoid: miga SW19B 10677 min2k bin 2932
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AAI clade 28-42
medoid: miga SW19B 10677 0005 idba bin 53
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AAI clade 28-43
medoid: miga SW19B 10677 min2k bin 1540
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AAI clade 28-44
medoid: miga SW19B 10677 min2k bin 3782
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AAI clade 28-45
medoid: miga SW19B 10677 0017 idba bin 95
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AAI clade 28-46
medoid: miga SW19B 10676 0004 idba bin 32
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AAI clade 28-47
medoid: miga SW19B 10677 0011 idba bin 121
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AAI clade 28-48
medoid: miga SW19B 10674 min2k bin 3257
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AAI clade 28-49
medoid: miga SW19B 10675 min2k bin 3699
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AAI clade 28-50
medoid: miga SW19B 10676 0033 idba bin 92
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AAI clade 28-51
medoid: miga SW19B 10677 min2k bin 2688
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AAI clade 28-52
medoid: miga SW19B 10677 min2k bin 442
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AAI clade 28-53
medoid: miga SW19B 10675 0012 idba bin 57
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AAI clade 28-54
medoid: miga SW19B 10676 0004 idba bin 100
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AAI clade 28-55
medoid: miga SW19B 10677 0041 idba bin 79
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AAI clade 28-56
medoid: miga SW19B 10678 min2k bin 3017
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AAI clade 28-57
medoid: miga PS19A HMP 2012 SRS023604 bin 27
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AAI clade 28-58
medoid: miga PS19A LeChatelierE 2013 MH0060 bin 18
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AAI clade 28-59
medoid: miga PS19A LeChatelierE 2013 MH0415 bin 72
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AAI clade 28-60
medoid: miga PS19A LiuW 2016 SRR3993017 bin 14
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AAI clade 28-1
medoid: asm GCA 002425935 1
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AAI clade 29
medoid: asm GCA 900317055 1
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AAI clade 30
medoid: gb MERW00000000
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AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
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AAI clade 32
medoid: asm GCA 002320005 1
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AAI clade 33
medoid: asm GCA 900318825 1
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AAI clade 34
medoid: miga BA16A 35 5E
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AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
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AAI clade 36
medoid: asm GCA 001604115 1
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AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
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AAI clade 38
medoid: miga BA16A 35 12A
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AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
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AAI clade 40
medoid: asm GCA 002372655 1
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AAI clade 41
medoid: miga ZQ19A BG 670
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AAI clade 42
medoid: asm GCA 002732585 1
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AAI clade 43
medoid: gb MFTG00000000
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AAI clade 44
medoid: asm GCF 000217915 1
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AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
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AAI clade 46
medoid: asm GCA 005503595 1
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AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
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AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
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AAI clade 49
medoid: asm GCA 002787475 1
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AAI clade 50
medoid: asm GCA 002411275 1
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AAI clade 51
medoid: asm GCA 001003965 1
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AAI clade 52
medoid: asm GCA 900315795 1
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AAI clade 53
medoid: asm GCA 002782265 1
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AAI clade 54
medoid: asm GCA 002506275 1
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AAI clade 55
medoid: asm GCA 002501805 1
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AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
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AAI clade 57
medoid: asm GCA 002362915 1
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AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
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AAI clade 59
medoid: asm GCA 002478295 1
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AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
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AAI clade 61
medoid: asm GCA 002373045 1
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AAI clade 62
medoid: gb PLQF00000000
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AAI clade 63
medoid: asm GCA 002352835 1
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AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
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AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
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AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
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AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
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AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
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AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
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AAI clade 70
medoid: asm GCA 002369075 1
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AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
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AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
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AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
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AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
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AAI clade 75
medoid: asm GCA 002294525 1
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AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
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AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
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AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
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AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
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AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
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AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
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AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
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AAI clade 84
medoid: asm GCA 003020965 1
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AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
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AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
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AAI clade 87
medoid: asm GCA 001701225 1
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AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
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AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
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AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
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AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
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AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
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AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1