AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: asm GCA 900155255 1
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AAI clade 2
medoid: asm GCA 003225555 1
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AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
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AAI clade 4
medoid: miga BA16A LX33 339
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AAI clade 5
medoid: asm GCA 002344625 1
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AAI clade 6
medoid: miga ZQ19A BG 240
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AAI clade 7
medoid: asm GCA 003220495 1
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AAI clade 8
medoid: asm GCA 001768045 1
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AAI clade 9
medoid: miga ZQ19A BG 239
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AAI clade 10
medoid: asm GCA 002508675 1
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AAI clade 11
medoid: miga PU18A 2609459660
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AAI clade 12
medoid: asm GCA 003662385 1
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AAI clade 13
medoid: asm GCA 002869845 2
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AAI clade 14
medoid: miga ZQ19A BG 334
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AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
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AAI clade 16
medoid: asm GCA 003218215 1
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AAI clade 17
medoid: gb PMWP00000000
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AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
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AAI clade 19
medoid: miga ZQ19A BG 192
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AAI clade 20
medoid: asm GCA 003222055 1
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AAI clade 21
medoid: asm GCA 002304435 1
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AAI clade 22
medoid: gb PMOA00000000
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AAI clade 23
medoid: asm GCA 001180165 1
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AAI clade 24
medoid: asm GCA 900155275 1
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AAI clade 25
medoid: asm GCA 003562785 1
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AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
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AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
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AAI clade 27-1
medoid: asm GCA 002399965 1
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AAI clade 27-2
medoid: miga PS19A XieH 2016 YSZC12003 37399 bin 51
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AAI clade 27-3
medoid: asm GCA 001603385 1
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AAI clade 27-4
medoid: asm GCA 003851245 1
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AAI clade 27-5
medoid: asm GCA 002383435 1
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AAI clade 27-6
medoid: miga SW19B 10674 0009 idba bin 136
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AAI clade 27-7
medoid: miga SW19B 10677 0002 idba bin 54
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AAI clade 27-8
medoid: asm GCA 002309805 1
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AAI clade 27-9
medoid: asm GCA 002307185 1
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AAI clade 27-10
medoid: asm GCA 002305015 1
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AAI clade 27-11
medoid: asm GCA 002315615 1
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AAI clade 27-12
medoid: asm GCA 002315435 1
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AAI clade 27-13
medoid: asm GCA 002340405 1
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AAI clade 27-14
medoid: asm GCA 002359825 1
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AAI clade 27-15
medoid: asm GCA 002351805 1
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AAI clade 27-16
medoid: asm GCA 002373755 1
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AAI clade 27-17
medoid: asm GCA 002381645 1
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AAI clade 27-18
medoid: asm GCA 002379885 1
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AAI clade 27-19
medoid: asm GCA 002396385 1
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AAI clade 27-20
medoid: asm GCA 002393965 1
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AAI clade 27-21
medoid: asm GCA 002410265 1
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AAI clade 27-22
medoid: asm GCA 002431595 1
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AAI clade 27-23
medoid: asm GCA 002359135 1
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AAI clade 27-24
medoid: miga PS19A VogtmannE 2016 MMRS84085284ST 27 0 0 bin 42
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AAI clade 27-25
medoid: miga PS19A LoombaR 2017 SID5208 byt bin 35
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AAI clade 27-26
medoid: miga PS19A BackhedF 2015 SID10 4M bin 11
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AAI clade 27-27
medoid: miga PS19A BackhedF 2015 SID377 4M bin 15
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AAI clade 27-28
medoid: miga PS19A LeChatelierE 2013 MH0415 bin 58
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AAI clade 27-29
medoid: asm GCA 002315285 1
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AAI clade 27-30
medoid: miga PS19A YuJ 2015 SZAXPI015246 34 bin 31
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AAI clade 27-31
medoid: asm GCA 002320565 1
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AAI clade 27-32
medoid: miga PS19A HeQ 2017 RSZAXPI003103 141 bin 13
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AAI clade 27-33
medoid: asm GCA 002483985 1
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AAI clade 27-34
medoid: miga PS19A BackhedF 2015 SID10 M bin 16
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AAI clade 27-35
medoid: asm GCA 002471225 1
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AAI clade 27-36
medoid: asm GCA 002305265 1
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AAI clade 27-37
medoid: asm GCA 002394585 1
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AAI clade 27-38
medoid: asm GCA 002395775 1
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AAI clade 27-39
medoid: asm GCA 002391275 1
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AAI clade 27-40
medoid: miga SW19B 10572 0041 idba bin 76
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AAI clade 27-41
medoid: miga SW19B 10676 0035 idba bin 82
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AAI clade 27-42
medoid: asm GCA 003640335 1
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AAI clade 27-43
medoid: miga PS19A HMP 2012 SRS019071 bin 76
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AAI clade 27-44
medoid: miga SW19B 10676 0004 idba bin 48
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AAI clade 27-45
medoid: miga SW19B 10678 0032 idba bin 142
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AAI clade 27-46
medoid: miga SW19B 10677 0018 idba bin 39
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AAI clade 27-47
medoid: miga SW19B 10677 0030 idba bin 71
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AAI clade 27-48
medoid: miga SW19B 10677 0045 idba bin 154
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AAI clade 27-49
medoid: miga SW19B 10677 0023 idba bin 236
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AAI clade 27-50
medoid: miga PS19A LeChatelierE 2013 MH0421 bin 38
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AAI clade 27-51
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES17 bin 75
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AAI clade 27-52
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES30 bin 30
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AAI clade 27-53
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES3 bin 95
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AAI clade 27-54
medoid: miga PS19A CosteaPI 2017 mickey2 11 0 0 bin 53
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AAI clade 27-55
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES5 bin 91
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AAI clade 27-56
medoid: miga PS19A BritoIL 2016 W2 44 SA bin 3
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AAI clade 27-57
medoid: miga PS19A ZeeviD 2015 PNP Main 624 megahit bin 7
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AAI clade 27-58
medoid: miga PS19A ChengpingW 2017 AS20raw bin 12
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AAI clade 27-59
medoid: miga PS19A CM periimplantitis SP 287SPT T016 bin 27
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AAI clade 27-60
medoid: miga PS19A CM periimplantitis SP 323SPI T016 bin 16
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AAI clade 27-61
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 5
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AAI clade 27-62
medoid: miga PS19A LeChatelierE 2013 MH0181 bin 59
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AAI clade 27-63
medoid: miga PS19A CosteaPI 2017 SID713A028 11 0 0 bin 44
2 datasets: miga PS19A CosteaPI 2017 SID713A028 11 0 0 bin 44 (AAI: 100.0%) and miga PS19A QinJ 2012 NLM001 bin 13 (AAI: 64.27%)
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AAI clade 27-64
medoid: miga PS19A ZellerG 2014 CCIS70398272ST 4 0 bin 31
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AAI clade 27-65
medoid: miga PS19A YuJ 2015 SZAXPI017457 24 bin 51
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AAI clade 27-66
medoid: miga PS19A HMP 2012 SRS018394 bin 18
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AAI clade 27-67
medoid: miga PS19A LeChatelierE 2013 MH0055 bin 38
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AAI clade 27-68
medoid: miga PS19A QinN 2014 LD 33 bin 37
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AAI clade 27-69
medoid: miga PS19A ZeeviD 2015 PNP Main 577 megahit bin 26
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AAI clade 27-70
medoid: miga PS19A ZellerG 2014 CCIS16326685ST 4 0 bin 21
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AAI clade 27-71
medoid: miga PS19A LiJ 2014 MH0385 bin 51
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AAI clade 27-72
medoid: miga PS19A LiJ 2014 MH0386 bin 77
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AAI clade 27-73
medoid: miga PS19A LiJ 2017 H1M513816 bin 47
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AAI clade 27-74
medoid: miga PS19A NielsenHB 2014 O2 UC24 2 bin 41
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AAI clade 27-75
medoid: miga PS19A VatanenT 2016 G80614 megahit bin 7
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AAI clade 27-76
medoid: miga PS19A XieH 2016 YSZC12003 35739 bin 8
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AAI clade 27-77
medoid: miga PS19A XieH 2016 YSZC12003 36703 bin 44
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AAI clade 27-78
medoid: miga PS19A YuJ 2015 SZAXPI015211 166 bin 33
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AAI clade 27-79
medoid: miga PS19A ZeeviD 2015 PNP Main 511 megahit bin 2
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AAI clade 27-1
medoid: asm GCA 002399965 1
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AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
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AAI clade 29
medoid: asm GCA 900317055 1
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AAI clade 30
medoid: gb MERW00000000
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AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
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AAI clade 32
medoid: asm GCA 002320005 1
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AAI clade 33
medoid: asm GCA 900318825 1
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AAI clade 34
medoid: miga BA16A 35 5E
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AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
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AAI clade 36
medoid: asm GCA 001604115 1
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AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
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AAI clade 38
medoid: miga BA16A 35 12A
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AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
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AAI clade 40
medoid: asm GCA 002372655 1
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AAI clade 41
medoid: miga ZQ19A BG 670
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AAI clade 42
medoid: asm GCA 002732585 1
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AAI clade 43
medoid: gb MFTG00000000
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AAI clade 44
medoid: asm GCF 000217915 1
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AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
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AAI clade 46
medoid: asm GCA 005503595 1
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AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
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AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
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AAI clade 49
medoid: asm GCA 002787475 1
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AAI clade 50
medoid: asm GCA 002411275 1
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AAI clade 51
medoid: asm GCA 001003965 1
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AAI clade 52
medoid: asm GCA 900315795 1
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AAI clade 53
medoid: asm GCA 002782265 1
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AAI clade 54
medoid: asm GCA 002506275 1
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AAI clade 55
medoid: asm GCA 002501805 1
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AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
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AAI clade 57
medoid: asm GCA 002362915 1
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AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
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AAI clade 59
medoid: asm GCA 002478295 1
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AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
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AAI clade 61
medoid: asm GCA 002373045 1
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AAI clade 62
medoid: gb PLQF00000000
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AAI clade 63
medoid: asm GCA 002352835 1
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AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
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AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
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AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
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AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
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AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
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AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
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AAI clade 70
medoid: asm GCA 002369075 1
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AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
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AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
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AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
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AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
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AAI clade 75
medoid: asm GCA 002294525 1
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AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
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AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
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AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
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AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
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AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
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AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
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AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
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AAI clade 84
medoid: asm GCA 003020965 1
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AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
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AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
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AAI clade 87
medoid: asm GCA 001701225 1
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AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
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AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
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AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
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AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
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AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
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AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1