AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: asm GCA 900155255 1
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AAI clade 2
medoid: asm GCA 003225555 1
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AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
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AAI clade 4
medoid: miga BA16A LX33 339
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AAI clade 5
medoid: asm GCA 002344625 1
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AAI clade 6
medoid: miga ZQ19A BG 240
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AAI clade 7
medoid: asm GCA 003220495 1
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AAI clade 8
medoid: asm GCA 001768045 1
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AAI clade 9
medoid: miga ZQ19A BG 239
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AAI clade 10
medoid: asm GCA 002508675 1
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AAI clade 11
medoid: miga PU18A 2609459660
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AAI clade 12
medoid: asm GCA 003662385 1
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AAI clade 13
medoid: asm GCA 002869845 2
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AAI clade 14
medoid: miga ZQ19A BG 334
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AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
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AAI clade 16
medoid: asm GCA 003218215 1
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AAI clade 17
medoid: gb PMWP00000000
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AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
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AAI clade 19
medoid: miga ZQ19A BG 192
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AAI clade 20
medoid: asm GCA 003222055 1
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AAI clade 21
medoid: asm GCA 002304435 1
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AAI clade 22
medoid: gb PMOA00000000
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AAI clade 23
medoid: asm GCA 001180165 1
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AAI clade 24
medoid: asm GCA 900155275 1
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AAI clade 24-1
medoid: miga AP18A bin 40
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AAI clade 24-2
medoid: asm GCA 002339905 1
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AAI clade 24-3
medoid: asm GCA 005503535 1
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AAI clade 24-4
medoid: miga DE18A TARA ANW MAG 00059
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AAI clade 24-5
medoid: asm GCA 001603335 1
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AAI clade 24-6
medoid: miga DE18A TARA IOS MAG 00003
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AAI clade 24-7
medoid: asm GCA 002733495 1
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AAI clade 24-8
medoid: asm GCA 004144345 1
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AAI clade 24-9
medoid: miga DE18A TARA PSE MAG 00124
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AAI clade 24-10
medoid: asm GCA 001768795 1
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AAI clade 24-11
medoid: asm GCA 002421905 1
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AAI clade 24-12
medoid: asm GCA 002320485 1
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AAI clade 24-13
medoid: asm GCA 002448575 1
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AAI clade 24-13-1
medoid: asm GCA 002448575 1
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AAI clade 24-13-1-1
medoid: asm GCA 002320665 1
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AAI clade 24-13-1-2
medoid: asm GCA 002448575 1
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AAI clade 24-13-1-3
medoid: asm GCA 002420065 1
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AAI clade 24-13-1-4
medoid: asm GCA 002483465 1
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AAI clade 24-13-1-5
medoid: miga DE18A TARA ANW MAG 00041
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AAI clade 24-13-1-6
medoid: asm GCA 002789675 1
1 dataset: asm GCA 002789675 1 (AAI: 100.0%)
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AAI clade 24-13-1-1
medoid: asm GCA 002320665 1
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AAI clade 24-13-2
medoid: miga ZQ19A BG 557
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AAI clade 24-13-1
medoid: asm GCA 002448575 1
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AAI clade 24-14
medoid: asm GCA 002733705 1
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AAI clade 24-15
medoid: gb LADQ00000000
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AAI clade 24-16
medoid: asm GCA 002401855 1
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AAI clade 24-17
medoid: asm GCA 002732685 1
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AAI clade 24-18
medoid: asm GCA 003105195 1
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AAI clade 24-19
medoid: gb PLAI00000000
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AAI clade 24-20
medoid: asm GCA 002500565 1
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AAI clade 24-21
medoid: asm GCA 002480495 1
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AAI clade 24-22
medoid: asm GCA 004292675 1
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AAI clade 24-23
medoid: asm GCA 001920055 1
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AAI clade 24-24
medoid: asm GCA 002471575 1
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AAI clade 24-25
medoid: asm GCA 900155275 1
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AAI clade 24-26
medoid: asm GCA 900150135 1
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AAI clade 24-27
medoid: asm GCA 900150085 1
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AAI clade 24-28
medoid: gb PKWQ00000000
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AAI clade 24-29
medoid: asm GCA 002409655 1
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AAI clade 24-30
medoid: asm GCA 002291925 1
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AAI clade 24-31
medoid: miga TJ18A OLLF01
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AAI clade 24-32
medoid: miga DE18A TARA ANW MAG 00050
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AAI clade 24-33
medoid: asm GCA 002433705 1
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AAI clade 24-34
medoid: asm GCA 002457765 1
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AAI clade 24-35
medoid: asm GCA 002348585 1
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AAI clade 24-36
medoid: asm GCA 002500465 1
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AAI clade 24-37
medoid: asm GCA 002384365 1
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AAI clade 24-38
medoid: asm GCA 002937595 1
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AAI clade 24-39
medoid: asm GCA 002787635 1
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AAI clade 24-40
medoid: miga DE18A TARA RED MAG 00004
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AAI clade 24-41
medoid: asm GCA 002341725 1
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AAI clade 24-42
medoid: asm GCA 002386585 1
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AAI clade 24-43
medoid: asm GCA 002434505 1
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AAI clade 24-44
medoid: miga PS19A OhJ 2014 MET0310 megahit bin 13
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AAI clade 24-45
medoid: asm GCA 005502685 1
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AAI clade 24-46
medoid: asm GCA 002363865 1
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AAI clade 24-47
medoid: asm GCA 002433065 1
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AAI clade 24-48
medoid: asm GCA 002348005 1
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AAI clade 24-49
medoid: miga SW19B 10675 0038 idba bin 46
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AAI clade 24-50
medoid: asm GCA 001767855 1
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AAI clade 24-51
medoid: asm GCA 001464425 1
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AAI clade 24-52
medoid: asm GCA 002322775 1
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AAI clade 24-53
medoid: miga ZQ19A BG 515
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AAI clade 24-54
medoid: asm GCA 002483135 1
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AAI clade 24-55
medoid: asm GCA 002337285 1
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AAI clade 24-56
medoid: asm GCA 002321835 1
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AAI clade 24-57
medoid: asm GCA 002328415 1
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AAI clade 24-58
medoid: gb PLXM00000000
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AAI clade 24-59
medoid: asm GCA 002391045 1
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AAI clade 24-60
medoid: asm GCA 002328405 1
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AAI clade 24-61
medoid: asm GCA 002791805 1
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AAI clade 24-62
medoid: miga SS18A Bin 27 contigs
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AAI clade 24-63
medoid: miga DE18A TARA MED MAG 00083
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AAI clade 24-64
medoid: asm GCA 002328385 1
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AAI clade 24-65
medoid: asm GCA 002327565 1
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AAI clade 24-66
medoid: miga DE18A TARA PSE MAG 00027
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AAI clade 24-67
medoid: asm GCA 002342325 1
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AAI clade 24-68
medoid: asm GCA 002359695 1
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AAI clade 24-69
medoid: asm GCA 004144595 1
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AAI clade 24-70
medoid: asm GCA 002084505 1
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AAI clade 24-71
medoid: miga DE18A TARA PSW MAG 00048
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AAI clade 24-72
medoid: miga DE18A TARA PSW MAG 00036
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AAI clade 24-73
medoid: asm GCA 003331985 1
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AAI clade 24-74
medoid: miga DE18A TARA ION MAG 00026
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AAI clade 24-75
medoid: asm GCA 004321805 1
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AAI clade 24-76
medoid: miga DE18A TARA ASW MAG 00008
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AAI clade 24-77
medoid: asm GCA 001464855 1
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AAI clade 24-78
medoid: gb PKXB00000000
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AAI clade 24-79
medoid: gb PMFJ00000000
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AAI clade 24-80
medoid: miga DE18A TARA IOS MAG 00052
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AAI clade 24-81
medoid: miga DE18A TARA ANW MAG 00018
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AAI clade 24-82
medoid: miga DE18A TARA MED MAG 00042
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AAI clade 24-83
medoid: miga DE18A TARA ANW MAG 00064
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AAI clade 24-84
medoid: miga DE18A TARA MED MAG 00028
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AAI clade 24-85
medoid: miga DE18A TARA PON MAG 00039
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AAI clade 24-86
medoid: miga DE18A TARA IOS MAG 00010
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AAI clade 24-87
medoid: miga DE18A TARA MED MAG 00113
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AAI clade 24-88
medoid: miga DE18A TARA PON MAG 00046
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AAI clade 24-89
medoid: miga DE18A TARA PSW MAG 00074
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AAI clade 24-90
medoid: miga DE18A TARA PSW MAG 00115
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AAI clade 24-91
medoid: miga DE18A TARA RED MAG 00034
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AAI clade 24-92
medoid: asm GCA 002938155 1
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AAI clade 24-93
medoid: miga SW19B 10675 min2k bin 3611
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AAI clade 24-94
medoid: miga SW19B 10677 0001 idba bin 117
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AAI clade 24-95
medoid: miga SW19B 10677 0009 idba bin 203
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AAI clade 24-96
medoid: miga ZQ19A BG 250
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AAI clade 24-97
medoid: miga ZQ19A BG 266
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AAI clade 24-98
medoid: miga ZQ19A BG 419
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AAI clade 24-99
medoid: asm GCA 002791835 1
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AAI clade 24-100
medoid: miga RE19A Wolbachia O03
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AAI clade 24-1
medoid: miga AP18A bin 40
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AAI clade 25
medoid: asm GCA 003562785 1
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AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
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AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
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AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
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AAI clade 29
medoid: asm GCA 900317055 1
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AAI clade 30
medoid: gb MERW00000000
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AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
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AAI clade 32
medoid: asm GCA 002320005 1
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AAI clade 33
medoid: asm GCA 900318825 1
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AAI clade 34
medoid: miga BA16A 35 5E
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AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
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AAI clade 36
medoid: asm GCA 001604115 1
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AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
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AAI clade 38
medoid: miga BA16A 35 12A
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AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
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AAI clade 40
medoid: asm GCA 002372655 1
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AAI clade 41
medoid: miga ZQ19A BG 670
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AAI clade 42
medoid: asm GCA 002732585 1
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AAI clade 43
medoid: gb MFTG00000000
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AAI clade 44
medoid: asm GCF 000217915 1
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AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
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AAI clade 46
medoid: asm GCA 005503595 1
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AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
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AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
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AAI clade 49
medoid: asm GCA 002787475 1
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AAI clade 50
medoid: asm GCA 002411275 1
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AAI clade 51
medoid: asm GCA 001003965 1
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AAI clade 52
medoid: asm GCA 900315795 1
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AAI clade 53
medoid: asm GCA 002782265 1
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AAI clade 54
medoid: asm GCA 002506275 1
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AAI clade 55
medoid: asm GCA 002501805 1
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AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
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AAI clade 57
medoid: asm GCA 002362915 1
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AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
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AAI clade 59
medoid: asm GCA 002478295 1
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AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
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AAI clade 61
medoid: asm GCA 002373045 1
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AAI clade 62
medoid: gb PLQF00000000
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AAI clade 63
medoid: asm GCA 002352835 1
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AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
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AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
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AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
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AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
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AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
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AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
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AAI clade 70
medoid: asm GCA 002369075 1
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AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
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AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
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AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
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AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
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AAI clade 75
medoid: asm GCA 002294525 1
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AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
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AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
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AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
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AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
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AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
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AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
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AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
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AAI clade 84
medoid: asm GCA 003020965 1
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AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
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AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
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AAI clade 87
medoid: asm GCA 001701225 1
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AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
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AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
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AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
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AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
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AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
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AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1