AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: asm GCA 900155255 1
-
AAI clade 2
medoid: asm GCA 003225555 1
-
AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
-
AAI clade 4
medoid: miga BA16A LX33 339
-
AAI clade 5
medoid: asm GCA 002344625 1
-
AAI clade 6
medoid: miga ZQ19A BG 240
-
AAI clade 7
medoid: asm GCA 003220495 1
-
AAI clade 8
medoid: asm GCA 001768045 1
-
AAI clade 9
medoid: miga ZQ19A BG 239
-
AAI clade 10
medoid: asm GCA 002508675 1
-
AAI clade 11
medoid: miga PU18A 2609459660
-
AAI clade 12
medoid: asm GCA 003662385 1
-
AAI clade 13
medoid: asm GCA 002869845 2
-
AAI clade 14
medoid: miga ZQ19A BG 334
-
AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
-
AAI clade 16
medoid: asm GCA 003218215 1
-
AAI clade 17
medoid: gb PMWP00000000
-
AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
-
AAI clade 19
medoid: miga ZQ19A BG 192
-
AAI clade 20
medoid: asm GCA 003222055 1
-
AAI clade 21
medoid: asm GCA 002304435 1
-
AAI clade 21-1
medoid: asm GCA 002304445 1
-
AAI clade 21-2
medoid: asm GCA 002290585 1
-
AAI clade 21-3
medoid: asm GCA 002737515 1
-
AAI clade 21-4
medoid: asm GCA 001604585 1
-
AAI clade 21-5
medoid: asm GCA 002383805 1
-
AAI clade 21-6
medoid: asm GCA 004293385 1
-
AAI clade 21-7
medoid: asm GCA 002367815 1
-
AAI clade 21-8
medoid: asm GCA 003331455 1
-
AAI clade 21-9
medoid: asm GCA 002364975 1
-
AAI clade 21-10
medoid: miga DE18A TARA ION MAG 00056
-
AAI clade 21-11
medoid: miga DE18A TARA IOS MAG 00036
-
AAI clade 21-12
medoid: miga DE18A TARA PSE MAG 00105
-
AAI clade 21-13
medoid: asm GCA 002346685 1
-
AAI clade 21-14
medoid: asm GCA 003331195 1
-
AAI clade 21-15
medoid: asm GCA 002376875 1
-
AAI clade 21-16
medoid: asm GCA 003566915 1
-
AAI clade 21-17
medoid: miga DE18A TARA ANE MAG 00064
-
AAI clade 21-18
medoid: miga PS19A ZeeviD 2015 PNP Main 609 megahit bin 42
-
AAI clade 21-19
medoid: asm GCA 002470805 1
-
AAI clade 21-20
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES5 bin 48
-
AAI clade 21-21
medoid: miga ZQ19A BG 272
-
AAI clade 21-22
medoid: asm GCA 002420265 1
-
AAI clade 21-23
medoid: miga DE18A TARA IOS MAG 00014
-
AAI clade 21-24
medoid: asm GCA 002309885 1
-
AAI clade 21-25
medoid: asm GCA 002392285 1
-
AAI clade 21-26
medoid: asm GCA 001831055 1
-
AAI clade 21-27
medoid: asm GCA 001831095 1
-
AAI clade 21-28
medoid: gb PLOH00000000
-
AAI clade 21-29
medoid: asm GCA 002304425 1
-
AAI clade 21-30
medoid: gb PLTZ00000000
-
AAI clade 21-31
medoid: asm GCA 003566885 1
-
AAI clade 21-32
medoid: miga SS18A Bin 25 contigs
-
AAI clade 21-33
medoid: asm GCA 003560715 1
-
AAI clade 21-34
medoid: asm GCA 003558025 1
1 dataset: asm GCA 003558025 1 (AAI: 100.0%)
-
AAI clade 21-35
medoid: asm GCA 003641745 1
-
AAI clade 21-36
medoid: miga DE18A TARA MED MAG 00044
-
AAI clade 21-37
medoid: miga DE18A TARA IOS MAG 00001
-
AAI clade 21-38
medoid: miga DE18A TARA RED MAG 00097
-
AAI clade 21-39
medoid: miga ZQ19A BG 470
-
AAI clade 21-40
medoid: miga PS19A ZellerG 2014 CCMD63399960ST 21 0 bin 73
-
AAI clade 21-41
medoid: miga PS19A BritoIL 2016 M1 64 ST bin 20
-
AAI clade 21-42
medoid: miga PS19A LeChatelierE 2013 MH0143 bin 26
-
AAI clade 21-43
medoid: asm GCA 003176015 1
-
AAI clade 21-44
medoid: asm GCA 002771405 1
-
AAI clade 21-1
medoid: asm GCA 002304445 1
-
AAI clade 22
medoid: gb PMOA00000000
-
AAI clade 23
medoid: asm GCA 001180165 1
-
AAI clade 24
medoid: asm GCA 900155275 1
-
AAI clade 25
medoid: asm GCA 003562785 1
-
AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
-
AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
-
AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
-
AAI clade 29
medoid: asm GCA 900317055 1
-
AAI clade 30
medoid: gb MERW00000000
-
AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
-
AAI clade 32
medoid: asm GCA 002320005 1
-
AAI clade 33
medoid: asm GCA 900318825 1
-
AAI clade 34
medoid: miga BA16A 35 5E
-
AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
-
AAI clade 36
medoid: asm GCA 001604115 1
-
AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
-
AAI clade 38
medoid: miga BA16A 35 12A
-
AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
-
AAI clade 40
medoid: asm GCA 002372655 1
-
AAI clade 41
medoid: miga ZQ19A BG 670
-
AAI clade 42
medoid: asm GCA 002732585 1
-
AAI clade 43
medoid: gb MFTG00000000
-
AAI clade 44
medoid: asm GCF 000217915 1
-
AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
-
AAI clade 46
medoid: asm GCA 005503595 1
-
AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
-
AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
-
AAI clade 49
medoid: asm GCA 002787475 1
-
AAI clade 50
medoid: asm GCA 002411275 1
-
AAI clade 51
medoid: asm GCA 001003965 1
-
AAI clade 52
medoid: asm GCA 900315795 1
-
AAI clade 53
medoid: asm GCA 002782265 1
-
AAI clade 54
medoid: asm GCA 002506275 1
-
AAI clade 55
medoid: asm GCA 002501805 1
-
AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
-
AAI clade 57
medoid: asm GCA 002362915 1
-
AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
-
AAI clade 59
medoid: asm GCA 002478295 1
-
AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
-
AAI clade 61
medoid: asm GCA 002373045 1
-
AAI clade 62
medoid: gb PLQF00000000
-
AAI clade 63
medoid: asm GCA 002352835 1
-
AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
-
AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
-
AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
-
AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
-
AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
-
AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
-
AAI clade 70
medoid: asm GCA 002369075 1
-
AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
-
AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
-
AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
-
AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
-
AAI clade 75
medoid: asm GCA 002294525 1
-
AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
-
AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
-
AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
-
AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
-
AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
-
AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
-
AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
-
AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
-
AAI clade 84
medoid: asm GCA 003020965 1
-
AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
-
AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
-
AAI clade 87
medoid: asm GCA 001701225 1
-
AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
-
AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
-
AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
-
AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
-
AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
-
AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1