AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: asm GCA 900155255 1
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AAI clade 2
medoid: asm GCA 003225555 1
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AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
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AAI clade 4
medoid: miga BA16A LX33 339
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AAI clade 5
medoid: asm GCA 002344625 1
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AAI clade 6
medoid: miga ZQ19A BG 240
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AAI clade 7
medoid: asm GCA 003220495 1
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AAI clade 8
medoid: asm GCA 001768045 1
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AAI clade 9
medoid: miga ZQ19A BG 239
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AAI clade 10
medoid: asm GCA 002508675 1
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AAI clade 11
medoid: miga PU18A 2609459660
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AAI clade 12
medoid: asm GCA 003662385 1
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AAI clade 12-1
medoid: asm GCA 001917865 1
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AAI clade 12-2
medoid: asm GCA 002789395 1
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AAI clade 12-3
medoid: asm GCA 003331425 1
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AAI clade 12-4
medoid: asm GCA 003651145 1
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AAI clade 12-5
medoid: asm GCA 001871475 1
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AAI clade 12-6
medoid: asm GCA 002778425 1
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AAI clade 12-7
medoid: asm GCA 002789435 1
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AAI clade 12-8
medoid: asm GCA 002762865 1
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AAI clade 12-9
medoid: asm GCA 003972945 1
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AAI clade 12-10
medoid: asm GCA 003702525 1
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AAI clade 12-11
medoid: miga AH17A FS866 Bin 23
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AAI clade 12-12
medoid: asm GCA 001563465 1
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AAI clade 12-13
medoid: asm GCA 003948265 1
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AAI clade 12-14
medoid: asm GCA 000812185 1
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AAI clade 12-15
medoid: asm GCA 004377085 1
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AAI clade 12-16
medoid: asm GCA 003662445 1
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AAI clade 12-17
medoid: asm GCA 001593855 1
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AAI clade 12-18
medoid: asm GCA 001593925 1
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AAI clade 12-19
medoid: asm GCA 003662155 1
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AAI clade 12-20
medoid: asm GCA 004375795 1
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AAI clade 12-21
medoid: asm GCA 001723855 1
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AAI clade 12-22
medoid: asm GCA 001595785 1
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AAI clade 12-23
medoid: asm GCA 001595815 1
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AAI clade 12-24
medoid: gb PLNS00000000
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AAI clade 12-25
medoid: asm GCA 003019515 1
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AAI clade 12-26
medoid: asm GCA 001717025 1
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AAI clade 12-27
medoid: asm GCA 001717015 1
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AAI clade 12-28
medoid: miga CB19A Bin 65
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AAI clade 12-29
medoid: miga JW18A EG4 putative host contigs
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AAI clade 12-30
medoid: asm GCA 001918735 1
6 datasets: asm GCA 002495485 1 (AAI: 59.77%), asm GCA 001918735 1 (AAI: 100.0%), asm GCA 001920655 1 (AAI: 58.33%), asm GCA 001919285 1 (AAI: 74.72%), asm GCA 001915065 1 (AAI: 61.27%), and miga SS18B METABAT VerySpecific 577 (AAI: 60.86%)
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AAI clade 12-31
medoid: miga CB19A Bin 91
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AAI clade 12-32
medoid: asm GCA 003662705 1
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AAI clade 12-33
medoid: asm GCA 002762975 1
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AAI clade 12-34
medoid: asm GCA 002498635 1
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AAI clade 12-35
medoid: asm GCA 002762835 1
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AAI clade 12-36
medoid: asm GCA 002502045 1
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AAI clade 12-37
medoid: asm GCA 003562145 1
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AAI clade 12-38
medoid: asm GCA 002496045 1
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AAI clade 12-39
medoid: asm GCA 002509145 1
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AAI clade 12-40
medoid: miga CB19A Bin 66
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AAI clade 12-41
medoid: asm GCA 002499005 1
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AAI clade 12-42
medoid: gb PLFZ00000000
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AAI clade 12-43
medoid: asm GCA 002494565 1
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AAI clade 12-44
medoid: asm GCA 002508315 1
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AAI clade 12-45
medoid: asm GCA 002497345 1
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AAI clade 12-46
medoid: asm GCA 002506645 1
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AAI clade 12-47
medoid: asm GCA 002501985 1
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AAI clade 12-48
medoid: asm GCA 003650625 1
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AAI clade 12-49
medoid: asm GCA 002506365 1
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AAI clade 12-50
medoid: asm GCA 002505645 1
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AAI clade 12-51
medoid: asm GCA 003649035 1
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AAI clade 12-52
medoid: asm GCA 002254395 1
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AAI clade 12-53
medoid: asm GCA 003663265 1
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AAI clade 12-54
medoid: asm GCA 001768965 1
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AAI clade 12-55
medoid: asm GCA 004375715 1
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AAI clade 12-56
medoid: miga AH17A FS881 Bin 18
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AAI clade 12-57
medoid: asm GCA 002789635 1
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AAI clade 12-58
medoid: miga AH17A FS856 Bin 26
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AAI clade 12-59
medoid: miga CB19A Bin 21
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AAI clade 12-60
medoid: asm GCA 004347815 1
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AAI clade 12-61
medoid: asm GCA 003554305 1
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AAI clade 12-62
medoid: asm GCA 003662935 1
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AAI clade 12-63
medoid: asm GCA 003553905 1
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AAI clade 12-64
medoid: asm GCA 003551125 1
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AAI clade 12-65
medoid: asm GCA 003557155 1
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AAI clade 12-66
medoid: asm GCA 002254405 1
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AAI clade 12-67
medoid: asm GCA 003660905 1
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AAI clade 12-68
medoid: asm GCA 003649025 1
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AAI clade 12-69
medoid: asm GCA 003649345 1
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AAI clade 12-70
medoid: asm GCA 002254645 1
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AAI clade 12-71
medoid: asm GCA 002254665 1
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AAI clade 12-72
medoid: asm GCA 003663355 1
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AAI clade 12-73
medoid: asm GCA 003661715 1
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AAI clade 12-74
medoid: asm GCA 003649235 1
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AAI clade 12-75
medoid: asm GCA 003663115 1
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AAI clade 12-76
medoid: asm GCA 003662565 1
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AAI clade 12-77
medoid: asm GCA 002255025 1
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AAI clade 12-78
medoid: asm GCA 003661845 1
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AAI clade 12-79
medoid: asm GCA 003649615 1
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AAI clade 12-80
medoid: asm GCA 003649445 1
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AAI clade 12-81
medoid: asm GCA 003649375 1
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AAI clade 12-82
medoid: asm GCA 003649485 1
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AAI clade 12-83
medoid: asm GCA 001508065 1
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AAI clade 12-84
medoid: asm GCA 003660685 1
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AAI clade 12-85
medoid: asm GCA 003660925 1
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AAI clade 12-86
medoid: asm GCA 003661265 1
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AAI clade 12-87
medoid: miga CB19A Bin 12
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AAI clade 12-88
medoid: asm GCA 003662625 1
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AAI clade 12-89
medoid: asm GCA 003663475 1
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AAI clade 12-90
medoid: asm GCA 003663585 1
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AAI clade 12-91
medoid: miga JW18A AB 777 F03 Nano contigs
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AAI clade 12-92
medoid: asm GCA 001919175 1
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AAI clade 12-93
medoid: miga SS18B METABAT VerySpecific 78
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AAI clade 12-94
medoid: gb ASPD00000000
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AAI clade 12-95
medoid: miga SS18B METABAT VerySpecific 457
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AAI clade 12-96
medoid: miga WB18A mgm4762950 3 050 upload
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AAI clade 12-97
medoid: miga WD15A P1181 101 39
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AAI clade 12-98
medoid: miga WB18A mgm4762925 3 050 upload
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AAI clade 12-99
medoid: asm GCA 002762665 1
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AAI clade 12-1
medoid: asm GCA 001917865 1
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AAI clade 13
medoid: asm GCA 002869845 2
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AAI clade 14
medoid: miga ZQ19A BG 334
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AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
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AAI clade 16
medoid: asm GCA 003218215 1
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AAI clade 17
medoid: gb PMWP00000000
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AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
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AAI clade 19
medoid: miga ZQ19A BG 192
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AAI clade 20
medoid: asm GCA 003222055 1
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AAI clade 21
medoid: asm GCA 002304435 1
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AAI clade 22
medoid: gb PMOA00000000
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AAI clade 23
medoid: asm GCA 001180165 1
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AAI clade 24
medoid: asm GCA 900155275 1
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AAI clade 25
medoid: asm GCA 003562785 1
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AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
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AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
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AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
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AAI clade 29
medoid: asm GCA 900317055 1
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AAI clade 30
medoid: gb MERW00000000
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AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
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AAI clade 32
medoid: asm GCA 002320005 1
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AAI clade 33
medoid: asm GCA 900318825 1
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AAI clade 34
medoid: miga BA16A 35 5E
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AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
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AAI clade 36
medoid: asm GCA 001604115 1
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AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
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AAI clade 38
medoid: miga BA16A 35 12A
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AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
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AAI clade 40
medoid: asm GCA 002372655 1
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AAI clade 41
medoid: miga ZQ19A BG 670
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AAI clade 42
medoid: asm GCA 002732585 1
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AAI clade 43
medoid: gb MFTG00000000
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AAI clade 44
medoid: asm GCF 000217915 1
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AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
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AAI clade 46
medoid: asm GCA 005503595 1
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AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
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AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
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AAI clade 49
medoid: asm GCA 002787475 1
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AAI clade 50
medoid: asm GCA 002411275 1
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AAI clade 51
medoid: asm GCA 001003965 1
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AAI clade 52
medoid: asm GCA 900315795 1
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AAI clade 53
medoid: asm GCA 002782265 1
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AAI clade 54
medoid: asm GCA 002506275 1
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AAI clade 55
medoid: asm GCA 002501805 1
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AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
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AAI clade 57
medoid: asm GCA 002362915 1
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AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
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AAI clade 59
medoid: asm GCA 002478295 1
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AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
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AAI clade 61
medoid: asm GCA 002373045 1
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AAI clade 62
medoid: gb PLQF00000000
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AAI clade 63
medoid: asm GCA 002352835 1
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AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
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AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
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AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
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AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
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AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
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AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
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AAI clade 70
medoid: asm GCA 002369075 1
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AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
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AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
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AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
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AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
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AAI clade 75
medoid: asm GCA 002294525 1
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AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
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AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
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AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
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AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
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AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
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AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
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AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
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AAI clade 84
medoid: asm GCA 003020965 1
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AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
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AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
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AAI clade 87
medoid: asm GCA 001701225 1
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AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
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AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
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AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
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AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
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AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
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AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1