AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: asm GCA 900155255 1
-
AAI clade 2
medoid: asm GCA 003225555 1
-
AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
-
AAI clade 4
medoid: miga BA16A LX33 339
-
AAI clade 5
medoid: asm GCA 002344625 1
-
AAI clade 6
medoid: miga ZQ19A BG 240
-
AAI clade 7
medoid: asm GCA 003220495 1
-
AAI clade 8
medoid: asm GCA 001768045 1
-
AAI clade 9
medoid: miga ZQ19A BG 239
-
AAI clade 10
medoid: asm GCA 002508675 1
-
AAI clade 11
medoid: miga PU18A 2609459660
-
AAI clade 11-1
medoid: asm GCA 003584895 1
-
AAI clade 11-2
medoid: asm GCA 003557225 1
-
AAI clade 11-3
medoid: gb PLRY00000000
-
AAI clade 11-4
medoid: asm GCA 003862385 1
-
AAI clade 11-5
medoid: miga PU18A 2609459707
-
AAI clade 11-6
medoid: asm GCA 900491415 1
-
AAI clade 11-7
medoid: asm GCA 900491095 1
-
AAI clade 11-8
medoid: asm GCA 900491165 1
-
AAI clade 11-9
medoid: asm GCA 900491135 1
-
AAI clade 11-10
medoid: miga ZQ19A BG 479
-
AAI clade 11-11
medoid: asm GCA 900491265 1
-
AAI clade 11-12
medoid: miga PU18A 2609459660
-
AAI clade 11-12-1
medoid: miga PU18A 2609459660
-
AAI clade 11-12-1-1
medoid: asm GCA 900491025 1
-
AAI clade 11-12-1-2
medoid: asm GCA 900491215 1
-
AAI clade 11-12-1-3
medoid: asm GCA 002401525 1
-
AAI clade 11-12-1-4
medoid: asm GCA 002732745 1
-
AAI clade 11-12-1-5
medoid: asm GCA 002400645 1
-
AAI clade 11-12-1-6
medoid: asm GCA 002414385 1
-
AAI clade 11-12-1-7
medoid: asm GCA 002869185 1
-
AAI clade 11-12-1-8
medoid: asm GCA 002753305 1
-
AAI clade 11-12-1-9
medoid: asm GCA 002238665 1
-
AAI clade 11-12-1-10
medoid: asm GCA 002238585 1
-
AAI clade 11-12-1-11
medoid: asm GCF 000402575 1
-
AAI clade 11-12-1-12
medoid: asm GCA 002435145 1
4 datasets: asm GCA 001566885 1 (AAI: 70.23%), asm GCA 002435145 1 (AAI: 100.0%), asm GCA 002163025 1 (AAI: 56.28%), and miga PU18A 2609459660 (AAI: 55.12%)
-
AAI clade 11-12-1-13
medoid: asm GCA 002343545 1
-
AAI clade 11-12-1-14
medoid: asm GCA 002381945 1
-
AAI clade 11-12-1-15
medoid: asm GCA 002422785 1
-
AAI clade 11-12-1-16
medoid: asm GCA 002500985 1
-
AAI clade 11-12-1-17
medoid: asm GCA 002354735 1
-
AAI clade 11-12-1-18
medoid: asm GCA 002366835 1
-
AAI clade 11-12-1-19
medoid: asm GCA 002376965 1
-
AAI clade 11-12-1-20
medoid: asm GCA 002408105 1
-
AAI clade 11-12-1-21
medoid: asm GCA 002450655 1
-
AAI clade 11-12-1-22
medoid: asm GCA 002432635 1
-
AAI clade 11-12-1-23
medoid: asm GCA 002297665 1
-
AAI clade 11-12-1-24
medoid: asm GCA 002313395 1
-
AAI clade 11-12-1-25
medoid: asm GCA 002469885 1
-
AAI clade 11-12-1-26
medoid: asm GCA 002333125 1
-
AAI clade 11-12-1-27
medoid: asm GCA 002376325 1
-
AAI clade 11-12-1-28
medoid: asm GCA 002470515 1
-
AAI clade 11-12-1-29
medoid: asm GCA 002432655 1
-
AAI clade 11-12-1-30
medoid: asm GCA 002311335 1
-
AAI clade 11-12-1-31
medoid: asm GCA 001794905 1
-
AAI clade 11-12-1-32
medoid: asm GCA 001801345 1
-
AAI clade 11-12-1-33
medoid: asm GCA 001801465 1
-
AAI clade 11-12-1-34
medoid: asm GCA 001802485 1
-
AAI clade 11-12-1-35
medoid: asm GCA 004193435 1
-
AAI clade 11-12-1-36
medoid: asm GCA 001730085 1
-
AAI clade 11-12-1-37
medoid: asm GCA 003558735 1
-
AAI clade 11-12-1-38
medoid: asm GCA 003558545 1
-
AAI clade 11-12-1-39
medoid: asm GCA 003552605 1
-
AAI clade 11-12-1-40
medoid: asm GCA 003553545 1
-
AAI clade 11-12-1-41
medoid: asm GCA 003561475 1
-
AAI clade 11-12-1-42
medoid: asm GCA 003645555 1
-
AAI clade 11-12-1-43
medoid: asm GCA 003647865 1
-
AAI clade 11-12-1-44
medoid: asm GCA 003663385 1
-
AAI clade 11-12-1-45
medoid: gb ASNO00000000
-
AAI clade 11-12-1-46
medoid: gb PLMI00000000
-
AAI clade 11-12-1-47
medoid: gb MGYM00000000
-
AAI clade 11-12-1-48
medoid: miga WB18A mgm4762946 3 050 upload
-
AAI clade 11-12-1-49
medoid: miga DE18A TARA PON MAG 00070
-
AAI clade 11-12-1-50
medoid: miga DE18A TARA PON MAG 00076
-
AAI clade 11-12-1-51
medoid: miga SW19B 10675 0015 idba bin 46
-
AAI clade 11-12-1-52
medoid: miga ZQ19A BG 128
-
AAI clade 11-12-1-53
medoid: miga ZQ19A BG 186
-
AAI clade 11-12-1-54
medoid: miga ZQ19A BG 454
-
AAI clade 11-12-1-55
medoid: miga ZQ19A BG 512
-
AAI clade 11-12-1-56
medoid: miga ZQ19A BG 546
-
AAI clade 11-12-1-57
medoid: miga ZQ19A BG 559
-
AAI clade 11-12-1-58
medoid: miga ZQ19A BG 702
-
AAI clade 11-12-1-59
medoid: miga MN17A scaffolds dsv l p
-
AAI clade 11-12-1-60
medoid: asm GCA 002770795 1
-
AAI clade 11-12-1-61
medoid: asm GCA 002771355 1
-
AAI clade 11-12-1-62
medoid: miga SS18A Bin 43 contigs
-
AAI clade 11-12-1-1
medoid: asm GCA 900491025 1
-
AAI clade 11-12-2
medoid: asm GCA 001007975 1
-
AAI clade 11-12-3
medoid: asm GCA 003565105 1
-
AAI clade 11-12-4
medoid: gb PMMN00000000
-
AAI clade 11-12-1
medoid: miga PU18A 2609459660
-
AAI clade 11-13
medoid: miga ZQ19A BG 605
-
AAI clade 11-14
medoid: asm GCA 003978055 1
-
AAI clade 11-15
medoid: asm GCA 002364315 1
-
AAI clade 11-16
medoid: asm GCA 002337295 1
-
AAI clade 11-17
medoid: asm GCA 002400455 1
-
AAI clade 11-18
medoid: asm GCA 001709035 1
-
AAI clade 11-19
medoid: asm GCA 001464965 1
-
AAI clade 11-20
medoid: asm GCA 001873165 1
-
AAI clade 11-21
medoid: asm GCA 001871925 1
-
AAI clade 11-22
medoid: miga AH17A FS854 Bin 110
-
AAI clade 11-23
medoid: asm GCA 002360695 1
-
AAI clade 11-24
medoid: asm GCA 002733295 1
-
AAI clade 11-25
medoid: asm GCA 002162755 1
-
AAI clade 11-26
medoid: asm GCA 001801565 1
-
AAI clade 11-27
medoid: asm GCA 002162705 1
-
AAI clade 11-28
medoid: asm GCA 002401655 1
-
AAI clade 11-29
medoid: asm GCA 002733505 1
-
AAI clade 11-30
medoid: miga ZQ19A BG 145
-
AAI clade 11-31
medoid: asm GCA 002163245 1
-
AAI clade 11-32
medoid: miga DE18A TARA RED MAG 00022
-
AAI clade 11-33
medoid: asm GCA 002733125 1
-
AAI clade 11-34
medoid: asm GCA 002477465 1
-
AAI clade 11-35
medoid: asm GCA 002335045 1
-
AAI clade 11-36
medoid: asm GCA 002456995 1
-
AAI clade 11-37
medoid: asm GCA 002632135 1
-
AAI clade 11-38
medoid: asm GCA 002134785 1
-
AAI clade 11-39
medoid: miga ZQ19A BG 025
-
AAI clade 11-40
medoid: asm GCA 002753135 1
-
AAI clade 11-41
medoid: gb PLIX00000000
-
AAI clade 11-42
medoid: asm GCA 001785205 1
-
AAI clade 11-43
medoid: asm GCA 002338445 1
-
AAI clade 11-44
medoid: miga DE18A TARA ASE MAG 00007
-
AAI clade 11-45
medoid: asm GCA 002423105 1
-
AAI clade 11-46
medoid: asm GCA 002435245 1
-
AAI clade 11-47
medoid: miga DE18A TARA ASW MAG 00014
-
AAI clade 11-48
medoid: asm GCA 002384615 1
-
AAI clade 11-49
medoid: miga DE18A TARA ION MAG 00017
-
AAI clade 11-50
medoid: asm GCA 002416505 1
-
AAI clade 11-51
medoid: asm GCA 002416125 1
-
AAI clade 11-52
medoid: miga DE18A TARA MED MAG 00046
-
AAI clade 11-53
medoid: miga DE18A TARA MED MAG 00052
-
AAI clade 11-54
medoid: asm GCA 002480175 1
-
AAI clade 11-55
medoid: asm GCA 002434985 1
-
AAI clade 11-56
medoid: miga DE18A TARA IOS MAG 00061
-
AAI clade 11-57
medoid: asm GCA 002352055 1
-
AAI clade 11-58
medoid: miga SS18B METABAT VerySpecific 449
-
AAI clade 11-59
medoid: asm GCA 002375335 1
-
AAI clade 11-60
medoid: asm GCA 002335235 1
-
AAI clade 11-61
medoid: asm GCA 002312935 1
-
AAI clade 11-62
medoid: asm GCA 002790275 1
-
AAI clade 11-63
medoid: asm GCA 002308435 1
-
AAI clade 11-64
medoid: miga DE18A TARA PSW MAG 00045
-
AAI clade 11-65
medoid: miga ZQ19A BG 428
-
AAI clade 11-66
medoid: asm GCA 004212895 1
-
AAI clade 11-67
medoid: asm GCA 003559115 1
-
AAI clade 11-68
medoid: asm GCA 004213855 1
-
AAI clade 11-69
medoid: asm GCA 002433465 1
-
AAI clade 11-70
medoid: miga WD15A P1181 101 28
-
AAI clade 11-71
medoid: asm GCA 001771785 1
-
AAI clade 11-72
medoid: asm GCA 002501535 1
-
AAI clade 11-73
medoid: asm GCA 001787535 1
-
AAI clade 11-74
medoid: asm GCA 001801305 1
-
AAI clade 11-75
medoid: miga WD15A P911 103 50
-
AAI clade 11-76
medoid: asm GCA 003565775 1
-
AAI clade 11-77
medoid: asm GCA 003564175 1
-
AAI clade 11-78
medoid: asm GCA 003565395 1
-
AAI clade 11-79
medoid: asm GCA 003550875 1
-
AAI clade 11-80
medoid: asm GCA 002085445 1
-
AAI clade 11-81
medoid: miga DE18A TARA MED MAG 00088
-
AAI clade 11-82
medoid: asm GCA 004213905 1
-
AAI clade 11-83
medoid: asm GCA 004212875 1
-
AAI clade 11-84
medoid: miga DE18A TARA PSE MAG 00047
-
AAI clade 11-85
medoid: miga DE18A TARA MED MAG 00110
-
AAI clade 11-86
medoid: miga DE18A TARA PON MAG 00035
-
AAI clade 11-87
medoid: miga DE18A TARA PSW MAG 00078
-
AAI clade 11-88
medoid: miga DE18A TARA IOS MAG 00037
-
AAI clade 11-89
medoid: miga AH17A FS854 Bin 10
-
AAI clade 11-90
medoid: miga PS19A HMP 2012 SRS011098 bin 12
-
AAI clade 11-91
medoid: miga PS19A HMP 2012 SRS023926 bin 65
-
AAI clade 11-92
medoid: miga NV17A contigs 6666666 127878
-
AAI clade 11-1
medoid: asm GCA 003584895 1
-
AAI clade 12
medoid: asm GCA 003662385 1
-
AAI clade 13
medoid: asm GCA 002869845 2
-
AAI clade 14
medoid: miga ZQ19A BG 334
-
AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
-
AAI clade 16
medoid: asm GCA 003218215 1
-
AAI clade 17
medoid: gb PMWP00000000
-
AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
-
AAI clade 19
medoid: miga ZQ19A BG 192
-
AAI clade 20
medoid: asm GCA 003222055 1
-
AAI clade 21
medoid: asm GCA 002304435 1
-
AAI clade 22
medoid: gb PMOA00000000
-
AAI clade 23
medoid: asm GCA 001180165 1
-
AAI clade 24
medoid: asm GCA 900155275 1
-
AAI clade 25
medoid: asm GCA 003562785 1
-
AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
-
AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
-
AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
-
AAI clade 29
medoid: asm GCA 900317055 1
-
AAI clade 30
medoid: gb MERW00000000
-
AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
-
AAI clade 32
medoid: asm GCA 002320005 1
-
AAI clade 33
medoid: asm GCA 900318825 1
-
AAI clade 34
medoid: miga BA16A 35 5E
-
AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
-
AAI clade 36
medoid: asm GCA 001604115 1
-
AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
-
AAI clade 38
medoid: miga BA16A 35 12A
-
AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
-
AAI clade 40
medoid: asm GCA 002372655 1
-
AAI clade 41
medoid: miga ZQ19A BG 670
-
AAI clade 42
medoid: asm GCA 002732585 1
-
AAI clade 43
medoid: gb MFTG00000000
-
AAI clade 44
medoid: asm GCF 000217915 1
-
AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
-
AAI clade 46
medoid: asm GCA 005503595 1
-
AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
-
AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
-
AAI clade 49
medoid: asm GCA 002787475 1
-
AAI clade 50
medoid: asm GCA 002411275 1
-
AAI clade 51
medoid: asm GCA 001003965 1
-
AAI clade 52
medoid: asm GCA 900315795 1
-
AAI clade 53
medoid: asm GCA 002782265 1
-
AAI clade 54
medoid: asm GCA 002506275 1
-
AAI clade 55
medoid: asm GCA 002501805 1
-
AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
-
AAI clade 57
medoid: asm GCA 002362915 1
-
AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
-
AAI clade 59
medoid: asm GCA 002478295 1
-
AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
-
AAI clade 61
medoid: asm GCA 002373045 1
-
AAI clade 62
medoid: gb PLQF00000000
-
AAI clade 63
medoid: asm GCA 002352835 1
-
AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
-
AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
-
AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
-
AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
-
AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
-
AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
-
AAI clade 70
medoid: asm GCA 002369075 1
-
AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
-
AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
-
AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
-
AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
-
AAI clade 75
medoid: asm GCA 002294525 1
-
AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
-
AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
-
AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
-
AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
-
AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
-
AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
-
AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
-
AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
-
AAI clade 84
medoid: asm GCA 003020965 1
-
AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
-
AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
-
AAI clade 87
medoid: asm GCA 001701225 1
-
AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
-
AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
-
AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
-
AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
-
AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
-
AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1