AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: asm GCA 900155255 1
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AAI clade 2
medoid: asm GCA 003225555 1
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AAI clade 3
medoid: miga PS19A HMP 2012 SRS017439 bin 51
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AAI clade 4
medoid: miga BA16A LX33 339
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AAI clade 5
medoid: asm GCA 002344625 1
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AAI clade 6
medoid: miga ZQ19A BG 240
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AAI clade 7
medoid: asm GCA 003220495 1
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AAI clade 8
medoid: asm GCA 001768045 1
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AAI clade 9
medoid: miga ZQ19A BG 239
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AAI clade 10
medoid: asm GCA 002508675 1
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AAI clade 11
medoid: miga PU18A 2609459660
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AAI clade 11-1
medoid: asm GCA 003584895 1
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AAI clade 11-1-1
medoid: asm GCA 003857425 1
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AAI clade 11-1-2
medoid: asm GCA 002352385 1
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AAI clade 11-1-3
medoid: asm GCA 003584895 1
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AAI clade 11-1-3-1
medoid: asm GCA 002454375 1
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AAI clade 11-1-3-2
medoid: asm GCA 002299425 1
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AAI clade 11-1-3-3
medoid: asm GCA 002256735 1
3 datasets: asm GCA 002256705 1 (AAI: 72.31%), asm GCA 002256735 1 (AAI: 100.0%), and gb PMJA00000000 (AAI: 69.13%)
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AAI clade 11-1-3-4
medoid: asm GCA 003584895 1
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AAI clade 11-1-3-5
medoid: asm GCA 003584865 1
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AAI clade 11-1-3-6
medoid: gb PMDM00000000
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AAI clade 11-1-3-7
medoid: miga AP18A bin 58
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AAI clade 11-1-3-1
medoid: asm GCA 002454375 1
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AAI clade 11-1-4
medoid: asm GCA 002352345 1
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AAI clade 11-1-1
medoid: asm GCA 003857425 1
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AAI clade 11-2
medoid: asm GCA 003557225 1
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AAI clade 11-3
medoid: gb PLRY00000000
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AAI clade 11-4
medoid: asm GCA 003862385 1
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AAI clade 11-5
medoid: miga PU18A 2609459707
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AAI clade 11-6
medoid: asm GCA 900491415 1
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AAI clade 11-7
medoid: asm GCA 900491095 1
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AAI clade 11-8
medoid: asm GCA 900491165 1
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AAI clade 11-9
medoid: asm GCA 900491135 1
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AAI clade 11-10
medoid: miga ZQ19A BG 479
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AAI clade 11-11
medoid: asm GCA 900491265 1
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AAI clade 11-12
medoid: miga PU18A 2609459660
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AAI clade 11-13
medoid: miga ZQ19A BG 605
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AAI clade 11-14
medoid: asm GCA 003978055 1
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AAI clade 11-15
medoid: asm GCA 002364315 1
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AAI clade 11-16
medoid: asm GCA 002337295 1
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AAI clade 11-17
medoid: asm GCA 002400455 1
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AAI clade 11-18
medoid: asm GCA 001709035 1
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AAI clade 11-19
medoid: asm GCA 001464965 1
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AAI clade 11-20
medoid: asm GCA 001873165 1
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AAI clade 11-21
medoid: asm GCA 001871925 1
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AAI clade 11-22
medoid: miga AH17A FS854 Bin 110
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AAI clade 11-23
medoid: asm GCA 002360695 1
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AAI clade 11-24
medoid: asm GCA 002733295 1
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AAI clade 11-25
medoid: asm GCA 002162755 1
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AAI clade 11-26
medoid: asm GCA 001801565 1
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AAI clade 11-27
medoid: asm GCA 002162705 1
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AAI clade 11-28
medoid: asm GCA 002401655 1
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AAI clade 11-29
medoid: asm GCA 002733505 1
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AAI clade 11-30
medoid: miga ZQ19A BG 145
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AAI clade 11-31
medoid: asm GCA 002163245 1
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AAI clade 11-32
medoid: miga DE18A TARA RED MAG 00022
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AAI clade 11-33
medoid: asm GCA 002733125 1
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AAI clade 11-34
medoid: asm GCA 002477465 1
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AAI clade 11-35
medoid: asm GCA 002335045 1
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AAI clade 11-36
medoid: asm GCA 002456995 1
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AAI clade 11-37
medoid: asm GCA 002632135 1
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AAI clade 11-38
medoid: asm GCA 002134785 1
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AAI clade 11-39
medoid: miga ZQ19A BG 025
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AAI clade 11-40
medoid: asm GCA 002753135 1
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AAI clade 11-41
medoid: gb PLIX00000000
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AAI clade 11-42
medoid: asm GCA 001785205 1
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AAI clade 11-43
medoid: asm GCA 002338445 1
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AAI clade 11-44
medoid: miga DE18A TARA ASE MAG 00007
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AAI clade 11-45
medoid: asm GCA 002423105 1
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AAI clade 11-46
medoid: asm GCA 002435245 1
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AAI clade 11-47
medoid: miga DE18A TARA ASW MAG 00014
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AAI clade 11-48
medoid: asm GCA 002384615 1
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AAI clade 11-49
medoid: miga DE18A TARA ION MAG 00017
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AAI clade 11-50
medoid: asm GCA 002416505 1
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AAI clade 11-51
medoid: asm GCA 002416125 1
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AAI clade 11-52
medoid: miga DE18A TARA MED MAG 00046
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AAI clade 11-53
medoid: miga DE18A TARA MED MAG 00052
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AAI clade 11-54
medoid: asm GCA 002480175 1
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AAI clade 11-55
medoid: asm GCA 002434985 1
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AAI clade 11-56
medoid: miga DE18A TARA IOS MAG 00061
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AAI clade 11-57
medoid: asm GCA 002352055 1
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AAI clade 11-58
medoid: miga SS18B METABAT VerySpecific 449
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AAI clade 11-59
medoid: asm GCA 002375335 1
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AAI clade 11-60
medoid: asm GCA 002335235 1
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AAI clade 11-61
medoid: asm GCA 002312935 1
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AAI clade 11-62
medoid: asm GCA 002790275 1
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AAI clade 11-63
medoid: asm GCA 002308435 1
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AAI clade 11-64
medoid: miga DE18A TARA PSW MAG 00045
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AAI clade 11-65
medoid: miga ZQ19A BG 428
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AAI clade 11-66
medoid: asm GCA 004212895 1
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AAI clade 11-67
medoid: asm GCA 003559115 1
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AAI clade 11-68
medoid: asm GCA 004213855 1
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AAI clade 11-69
medoid: asm GCA 002433465 1
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AAI clade 11-70
medoid: miga WD15A P1181 101 28
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AAI clade 11-71
medoid: asm GCA 001771785 1
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AAI clade 11-72
medoid: asm GCA 002501535 1
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AAI clade 11-73
medoid: asm GCA 001787535 1
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AAI clade 11-74
medoid: asm GCA 001801305 1
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AAI clade 11-75
medoid: miga WD15A P911 103 50
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AAI clade 11-76
medoid: asm GCA 003565775 1
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AAI clade 11-77
medoid: asm GCA 003564175 1
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AAI clade 11-78
medoid: asm GCA 003565395 1
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AAI clade 11-79
medoid: asm GCA 003550875 1
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AAI clade 11-80
medoid: asm GCA 002085445 1
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AAI clade 11-81
medoid: miga DE18A TARA MED MAG 00088
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AAI clade 11-82
medoid: asm GCA 004213905 1
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AAI clade 11-83
medoid: asm GCA 004212875 1
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AAI clade 11-84
medoid: miga DE18A TARA PSE MAG 00047
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AAI clade 11-85
medoid: miga DE18A TARA MED MAG 00110
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AAI clade 11-86
medoid: miga DE18A TARA PON MAG 00035
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AAI clade 11-87
medoid: miga DE18A TARA PSW MAG 00078
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AAI clade 11-88
medoid: miga DE18A TARA IOS MAG 00037
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AAI clade 11-89
medoid: miga AH17A FS854 Bin 10
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AAI clade 11-90
medoid: miga PS19A HMP 2012 SRS011098 bin 12
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AAI clade 11-91
medoid: miga PS19A HMP 2012 SRS023926 bin 65
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AAI clade 11-92
medoid: miga NV17A contigs 6666666 127878
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AAI clade 11-1
medoid: asm GCA 003584895 1
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AAI clade 12
medoid: asm GCA 003662385 1
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AAI clade 13
medoid: asm GCA 002869845 2
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AAI clade 14
medoid: miga ZQ19A BG 334
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AAI clade 15
medoid: miga PS19A CM periimplantitis SP 502SPI T016 bin 11
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AAI clade 16
medoid: asm GCA 003218215 1
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AAI clade 17
medoid: gb PMWP00000000
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AAI clade 18
medoid: miga PS19A FerrettiP 2018 CA C10052MS2906SK t0M15 bin 9
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AAI clade 19
medoid: miga ZQ19A BG 192
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AAI clade 20
medoid: asm GCA 003222055 1
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AAI clade 21
medoid: asm GCA 002304435 1
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AAI clade 22
medoid: gb PMOA00000000
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AAI clade 23
medoid: asm GCA 001180165 1
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AAI clade 24
medoid: asm GCA 900155275 1
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AAI clade 25
medoid: asm GCA 003562785 1
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AAI clade 26
medoid: miga PS19A FengQ 2015 SID531281 bin 23
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AAI clade 27
medoid: miga PS19A XieH 2016 YSZC12003 37277 bin 27
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AAI clade 28
medoid: miga PS19A CM madagascar A27 02 1FE bin 15
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AAI clade 29
medoid: asm GCA 900317055 1
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AAI clade 30
medoid: gb MERW00000000
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AAI clade 31
medoid: miga PS19A HMP 2012 SRS011126 bin 64
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AAI clade 32
medoid: asm GCA 002320005 1
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AAI clade 33
medoid: asm GCA 900318825 1
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AAI clade 34
medoid: miga BA16A 35 5E
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AAI clade 35
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES36 bin 65
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AAI clade 36
medoid: asm GCA 001604115 1
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AAI clade 37
medoid: miga SW19B 10676 0045 idba bin 101
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AAI clade 38
medoid: miga BA16A 35 12A
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AAI clade 39
medoid: miga SW19B 10678 0025 idba bin 69
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AAI clade 40
medoid: asm GCA 002372655 1
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AAI clade 41
medoid: miga ZQ19A BG 670
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AAI clade 42
medoid: asm GCA 002732585 1
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AAI clade 43
medoid: gb MFTG00000000
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AAI clade 44
medoid: asm GCF 000217915 1
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AAI clade 45
medoid: miga SW19B 10676 0006 idba bin 64
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AAI clade 46
medoid: asm GCA 005503595 1
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AAI clade 47
medoid: miga PS19A BritoIL 2016 W1 5 ST bin 1
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AAI clade 48
medoid: miga PS19A ZellerG 2014 CCIS38765456ST 20 0 bin 96
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AAI clade 49
medoid: asm GCA 002787475 1
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AAI clade 50
medoid: asm GCA 002411275 1
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AAI clade 51
medoid: asm GCA 001003965 1
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AAI clade 52
medoid: asm GCA 900315795 1
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AAI clade 53
medoid: asm GCA 002782265 1
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AAI clade 54
medoid: asm GCA 002506275 1
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AAI clade 55
medoid: asm GCA 002501805 1
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AAI clade 56
medoid: miga PS19A HMP 2012 SRS024289 bin 35
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AAI clade 57
medoid: asm GCA 002362915 1
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AAI clade 58
medoid: miga PS19A FerrettiP 2018 CA C10031IS2534SA t2M15 bin 2
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AAI clade 59
medoid: asm GCA 002478295 1
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AAI clade 60
medoid: miga PS19A HMP 2012 SRS019127 bin 5
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AAI clade 61
medoid: asm GCA 002373045 1
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AAI clade 62
medoid: gb PLQF00000000
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AAI clade 63
medoid: asm GCA 002352835 1
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AAI clade 64
medoid: miga PS19A FengQ 2015 SID31700 bin 66
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AAI clade 65
medoid: miga PS19A FerrettiP 2018 CA C10052MS2903SA t0M16 bin 3
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AAI clade 66
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES6 bin 23
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AAI clade 67
medoid: miga SW19B 10678 0003 idba bin 42
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AAI clade 68
medoid: miga PS19A BritoIL 2016 M1 3 ST bin 29
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AAI clade 69
medoid: miga PS19A ZeeviD 2015 PNP Main 426 megahit bin 27
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AAI clade 70
medoid: asm GCA 002369075 1
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AAI clade 71
medoid: miga SW19B 10675 0017 idba bin 79
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AAI clade 72
medoid: miga PS19A CM madagascar V53 02 1FE bin 36
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AAI clade 73
medoid: miga PS19A RampelliS 2015 H1 bin 24
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AAI clade 74
medoid: miga PS19A HMP 2012 SRS024138 bin 26
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AAI clade 75
medoid: asm GCA 002294525 1
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AAI clade 76
medoid: miga PS19A BritoIL 2016 WL 32 ST bin 18
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AAI clade 77
medoid: miga PS19A LeChatelierE 2013 MH0333 bin 59
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AAI clade 78
medoid: miga SW19B 10677 0035 idba bin 49
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AAI clade 79
medoid: miga PS19A XieH 2016 YSZC12003 37293 bin 71
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AAI clade 80
medoid: miga PS19A ZeeviD 2015 PNP Main 401 megahit bin 4
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AAI clade 81
medoid: miga PS19A OhJ 2014 MET0095 bin 1
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AAI clade 82
medoid: miga PS19A BritoIL 2016 M1 59 ST bin 42
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AAI clade 83
medoid: miga PS19A VincentC 2016 MM027 2 megahit bin 14
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AAI clade 84
medoid: asm GCA 003020965 1
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AAI clade 85
medoid: miga PS19A CosteaPI 2017 daisy 11 386 0 bin 19
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AAI clade 86
medoid: miga PS19A HMP 2012 SRS023595 bin 63
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AAI clade 87
medoid: asm GCA 001701225 1
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AAI clade 88
medoid: miga SW19B 10676 0021 idba bin 107
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AAI clade 89
medoid: miga SW19B 10678 0026 idba bin 16
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AAI clade 90
medoid: miga PS19A Bengtsson PalmeJ 2015 TRAVELRES2 bin 43
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AAI clade 91
medoid: miga PS19A VogtmannE 2016 MMRS43563715ST 27 0 0 bin 27
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AAI clade 92
medoid: miga SW19B 10674 0007 idba bin 173
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AAI clade 93
medoid: miga PS19A VatanenT 2016 G80490 bin 1