AAI clade 3-8-33 | MiGA Online

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AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
- AAI clade 3-1 medoid: Cytobacillus firmus GCF 900445365 1
- AAI clade 3-2 medoid: Lysinibacillus irui GCF 028877475 1
- AAI clade 3-3 medoid: Bacillus dicomae GCF 006494425 1
- AAI clade 3-4 medoid: Staphylococcus petrasii GCF 004684865 1
- AAI clade 3-5 medoid: Virgibacillus ndiopensis GCF 900187325 1
- AAI clade 3-6 medoid: Listeria innocua GCF 024721565 1
- AAI clade 3-7 medoid: Paenibacillus zanthoxyli JH29 GCF 000520715 1
- AAI clade 3-8 medoid: Brevibacillus formosus GCF 003013405 1
  - AAI clade 3-8-1 medoid: Aneurinibacillus migulanus GCF 006539965 1
  - AAI clade 3-8-2 medoid: Brevibacillus formosus GCF 003013405 1
  - AAI clade 3-8-3 medoid: Thermoactinomyces daqus GCF 000763315 1
  - AAI clade 3-8-4 medoid: Alicyclobacillus contaminans DSM 17975 GCF 000429525 1
  - AAI clade 3-8-5 medoid: Alkaliphilus flagellatus GCF 018919215 1
  - AAI clade 3-8-6 medoid: Alicyclobacillus acidoterrestris ATCC 49025 GCF 000444055 1
  - AAI clade 3-8-7 medoid: Alicyclobacillus sacchari GCF 004366795 1
  - AAI clade 3-8-8 medoid: Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 GCF 000024285 1
  - AAI clade 3-8-9 medoid: Brevibacillus borstelensis GCF 003710865 1
  - AAI clade 3-8-10 medoid: Polycladomyces subterraneus GCF 030433435 1
  - AAI clade 3-8-11 medoid: Effusibacillus lacus GCF 002335525 1
  - AAI clade 3-8-12 medoid: Sulfoacidibacillus thermotolerans GCF 003144315 1
  - AAI clade 3-8-13 medoid: Planifilum fulgidum GCF 900113175 1
  - AAI clade 3-8-14 medoid: Kroppenstedtia eburnea GCF 013282215 1
  - AAI clade 3-8-15 medoid: Natranaerobius thermophilus JW NM WN LF GCF 000020005 1
  - AAI clade 3-8-16 medoid: Peptoniphilus gorbachii GCF 016908115 1
  - AAI clade 3-8-17 medoid: Alicyclobacillus ferrooxydans GCF 001399675 1
  - AAI clade 3-8-18 medoid: Alicyclobacillus kakegawensis NBRC 103104 GCF 001552655 1
  - AAI clade 3-8-19 medoid: Tepidibacillus fermentans GCF 004342885 1
  - AAI clade 3-8-20 medoid: Allorhodopirellula heiligendammensis GCF 007860105 1
  - AAI clade 3-8-21 medoid: Anaeromonas frigoriresistens GCF 016820655 1
  - AAI clade 3-8-22 medoid: Armatimonas rosea GCF 014202505 1
  - AAI clade 3-8-23 medoid: Baia soyae GCF 004341445 1
  - AAI clade 3-8-24 medoid: Chrysiogenes arsenatis DSM 11915 GCF 000469585 1
  - AAI clade 3-8-25 medoid: Geovibrio thiophilus GCF 004087915 1
  - AAI clade 3-8-26 medoid: Desulfocicer vacuolatum DSM 3385 GCF 900176365 1
  - AAI clade 3-8-27 medoid: Gimesia alba GCF 007744675 1
  - AAI clade 3-8-28 medoid: Natroniella acetigena GCF 023227745 1
  - AAI clade 3-8-29 medoid: Helcococcus sueciensis DSM 17243 GCF 000423145 1
  - AAI clade 3-8-30 medoid: Humisphaera borealis GCF 015169395 1
  - AAI clade 3-8-31 medoid: Kyrpidia spormannii GCF 002804065 1
  - AAI clade 3-8-32 medoid: Marininema halotolerans GCF 900116235 1
  - AAI clade 3-8-33 medoid: Occallatibacter riparius GCF 025264625 1
    
    1 dataset: Occallatibacter riparius GCF 025264625 1 (AAI: 100.0%)
  - AAI clade 3-8-34 medoid: Shimazuella kribbensis DSM 45090 GCF 000428065 1
  - AAI clade 3-8-35 medoid: Tindallia californiensis GCF 900107405 1
  - AAI clade 3-8-36 medoid: Tumebacillus amylolyticus GCF 016722965 1
  - AAI clade 3-8-37 medoid: Urinicoccus massiliensis GCF 900120405 1
- AAI clade 3-9 medoid: Mesoplasma coleopterae GCF 002804245 1
- AAI clade 3-10 medoid: Halalkalibacter alkaliphilus GCF 023555415 1
- AAI clade 3-11 medoid: Mycoplasmopsis glycophila ATCC 35277 GCF 000687855 1
- AAI clade 3-12 medoid: Paenibacillus alginolyticus DSM 5050 NBRC 15375 GCF 000422905 1
- AAI clade 3-13 medoid: Leptospira paudalimensis GCF 026151345 1
AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
AAI clade 17 medoid: Dorea hominis GCF 014287705 1
AAI clade 18 medoid: Massilia putida GCF 001941825 1
AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1

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