AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
• AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
• AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 3-1 medoid: Cytobacillus firmus GCF 900445365 1
  • AAI clade 3-2 medoid: Lysinibacillus irui GCF 028877475 1
  • AAI clade 3-3 medoid: Bacillus dicomae GCF 006494425 1
  • AAI clade 3-4 medoid: Staphylococcus petrasii GCF 004684865 1
  • AAI clade 3-5 medoid: Virgibacillus ndiopensis GCF 900187325 1
  • AAI clade 3-6 medoid: Listeria innocua GCF 024721565 1
  • AAI clade 3-7 medoid: Paenibacillus zanthoxyli JH29 GCF 000520715 1
  • AAI clade 3-8 medoid: Brevibacillus formosus GCF 003013405 1
  • AAI clade 3-9 medoid: Mesoplasma coleopterae GCF 002804245 1
    • AAI clade 3-9-1 medoid: Mycoplasma capricolum subsp. capricolum ATCC 27343 GCF 000012765 1
    • AAI clade 3-9-2 medoid: Mesoplasma seiffertii ATCC 49495 GCF 000518725 1
    • AAI clade 3-9-3 medoid: Mesoplasma coleopterae GCF 002804245 1
    • AAI clade 3-9-4 medoid: Williamsoniiplasma lucivorax ATCC 49196 GCF 000518285 1
    • AAI clade 3-9-5 medoid: Spiroplasma monobiae MQ 1 GCF 002865545 1
    • AAI clade 3-9-6 medoid: Spiroplasma platyhelix PALS 1 GCF 012163225 1
    • AAI clade 3-9-7 medoid: Spiroplasma corruscae GCF 002237575 1
    • AAI clade 3-9-8 medoid: Hepatoplasma crinochetorum asm GCA 000582535 1
    • AAI clade 3-9-9 medoid: Tyloplasma litorale gb AP027078 1
    • AAI clade 3-9-10 medoid: Spiroplasma sabaudiense Ar 1343 GCF 000565215 1
  • AAI clade 3-10 medoid: Halalkalibacter alkaliphilus GCF 023555415 1
  • AAI clade 3-11 medoid: Mycoplasmopsis glycophila ATCC 35277 GCF 000687855 1
  • AAI clade 3-12 medoid: Paenibacillus alginolyticus DSM 5050 NBRC 15375 GCF 000422905 1
  • AAI clade 3-13 medoid: Leptospira paudalimensis GCF 026151345 1
• AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
• AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
• AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
• AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
• AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
• AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
• AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
• AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
• AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
• AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
• AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
• AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
• AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
• AAI clade 17 medoid: Dorea hominis GCF 014287705 1
• AAI clade 18 medoid: Massilia putida GCF 001941825 1
• AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
• AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
• AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
• AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
• AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
• AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
• AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
• AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
• AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
• AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
• AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
• AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
• AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
• AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
• AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
• AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1