AAI clade 3-7-15-4 | MiGA Online

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AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
- AAI clade 3-1 medoid: Cytobacillus firmus GCF 900445365 1
- AAI clade 3-2 medoid: Lysinibacillus irui GCF 028877475 1
- AAI clade 3-3 medoid: Bacillus dicomae GCF 006494425 1
- AAI clade 3-4 medoid: Staphylococcus petrasii GCF 004684865 1
- AAI clade 3-5 medoid: Virgibacillus ndiopensis GCF 900187325 1
- AAI clade 3-6 medoid: Listeria innocua GCF 024721565 1
- AAI clade 3-7 medoid: Paenibacillus zanthoxyli JH29 GCF 000520715 1
  - AAI clade 3-7-1 medoid: Paenibacillus timonensis GCF 022427145 1
  - AAI clade 3-7-2 medoid: Paenibacillus kribbensis GCF 002240415 1
  - AAI clade 3-7-3 medoid: Paenibacillus jilunlii GCF 001546055 1
  - AAI clade 3-7-4 medoid: Paenibacillus thiaminolyticus NBRC 15656 DSM 7262 GCF 004001005 1
  - AAI clade 3-7-5 medoid: Cohnella xylanilytica GCF 014212175 1
  - AAI clade 3-7-6 medoid: Desulfobacula phenolica GCF 900105645 1
  - AAI clade 3-7-7 medoid: Paenibacillus brevis GCF 018919145 1
  - AAI clade 3-7-8 medoid: Paenibacillus lutimineralis GCF 003991425 1
  - AAI clade 3-7-9 medoid: Paenibacillus radicis ex Gao et al 2016 GCF 014641555 1
  - AAI clade 3-7-10 medoid: Paenibacillus taichungensis GCF 013359905 1
  - AAI clade 3-7-11 medoid: Paenibacillus sophorae GCF 018966525 1
  - AAI clade 3-7-12 medoid: Paenibacillus montanisoli GCF 003268025 1
  - AAI clade 3-7-13 medoid: Paenibacillus endophyticus GCF 014192395 1
  - AAI clade 3-7-14 medoid: Paenibacillus antarcticus GCF 001637225 1
  - AAI clade 3-7-15 medoid: Paenibacillus lautus NBRC 15380 GCF 004000945 1
    
    AAI clade 3-7-15-1 medoid: Paenibacillus lautus NBRC 15380 GCF 004000945 1
    
    AAI clade 3-7-15-2 medoid: Paenibacillus algicola GCF 005577435 1
    
    AAI clade 3-7-15-3 medoid: Paenibacillus dakarensis GCF 001373415 1
    
    AAI clade 3-7-15-4 medoid: Paenibacillus faecalis GCF 900289175 1
    
    1 dataset: Paenibacillus faecalis GCF 900289175 1 (AAI: 100.0%)
    
    AAI clade 3-7-15-5 medoid: Paenibacillus lactis GCF 017873605 1
  - AAI clade 3-7-16 medoid: Paenibacillus catalpae GCF 900112695 1
  - AAI clade 3-7-17 medoid: Paenibacillus bovis GCF 001421015 2
  - AAI clade 3-7-18 medoid: Paenibacillus pasadenensis DSM 19293 GCF 000422485 1
  - AAI clade 3-7-19 medoid: Paenibacillus yonginensis GCF 001685395 1
  - AAI clade 3-7-20 medoid: Paenibacillus dendrobii GCF 009807035 1
  - AAI clade 3-7-21 medoid: Paenibacillus rhizovicinus GCF 010365285 1
  - AAI clade 3-7-22 medoid: Saccharibacillus deserti GCF 013185225 1
  - AAI clade 3-7-23 medoid: Saccharibacillus endophyticus GCF 013185185 1
  - AAI clade 3-7-24 medoid: Sebaldella termitidis ATCC 33386 GCF 000024405 1
  - AAI clade 3-7-25 medoid: Thermobacillus composti KWC4 GCF 000227705 2
  - AAI clade 3-7-26 medoid: Xylanibacillus composti GCF 018403685 1
  - AAI clade 3-7-27 medoid: Cohnella cholangitidis GCF 014107495 1
  - AAI clade 3-7-28 medoid: Paenibacillus pinisoli GCF 003605435 1
  - AAI clade 3-7-29 medoid: Adhaeretor mobilis GCF 007741515 1
  - AAI clade 3-7-30 medoid: Aureliella helgolandensis GCF 007752135 1
  - AAI clade 3-7-31 medoid: Cohnella candidum GCF 003713065 1
  - AAI clade 3-7-32 medoid: Cohnella hashimotonis GCF 030014955 1
  - AAI clade 3-7-33 medoid: Desulfoluna spongiiphila GCF 900101345 1
  - AAI clade 3-7-34 medoid: Desulfonema ishimotonii GCF 003851005 1
  - AAI clade 3-7-35 medoid: Insulibacter thermoxylanivorax GCF 015472005 1
  - AAI clade 3-7-36 medoid: Longirhabdus pacifica GCF 004115085 1
  - AAI clade 3-7-37 medoid: Paenibacillus abyssi GCF 014640295 1
  - AAI clade 3-7-38 medoid: Paenibacillus arenosi GCF 014841135 1
  - AAI clade 3-7-39 medoid: Paenibacillus auburnensis GCF 927798115 1
  - AAI clade 3-7-40 medoid: Paenibacillus etheri GCF 001012825 1
  - AAI clade 3-7-41 medoid: Paenibacillus alkaliterrae GCF 021532375 1
  - AAI clade 3-7-42 medoid: Paenibacillus segetis GCF 014639155 1
  - AAI clade 3-7-43 medoid: Paenibacillus borealis GCF 000758665 1
  - AAI clade 3-7-44 medoid: Paenibacillus bouchesdurhonensis GCF 900155685 1
  - AAI clade 3-7-45 medoid: Paenibacillus cellulosilyticus GCF 003182255 1
  - AAI clade 3-7-46 medoid: Paenibacillus sambharensis GCF 003233845 1
  - AAI clade 3-7-47 medoid: Paenibacillus gallinarum GCF 014836635 1
  - AAI clade 3-7-48 medoid: Paenibacillus terrigena DSM 21567 GCF 000374845 1
  - AAI clade 3-7-49 medoid: Paenibacillus spongiae GCF 024734895 1
  - AAI clade 3-7-50 medoid: Paenibacillus methanolicus GCF 008124765 1
  - AAI clade 3-7-51 medoid: Paenibacillus oenotherae GCF 019443105 1
  - AAI clade 3-7-52 medoid: Paenibacillus senegalimassiliensis GCF 001486585 1
  - AAI clade 3-7-53 medoid: Paenibacillus zeisoli GCF 003994465 1
  - AAI clade 3-7-54 medoid: Paenibacillus turpanensis GCF 011421635 1
  - AAI clade 3-7-55 medoid: Streptobacillus ratti GCF 001891165 1
  - AAI clade 3-7-56 medoid: Terracidiphilus gabretensis GCF 001449115 1
- AAI clade 3-8 medoid: Brevibacillus formosus GCF 003013405 1
- AAI clade 3-9 medoid: Mesoplasma coleopterae GCF 002804245 1
- AAI clade 3-10 medoid: Halalkalibacter alkaliphilus GCF 023555415 1
- AAI clade 3-11 medoid: Mycoplasmopsis glycophila ATCC 35277 GCF 000687855 1
- AAI clade 3-12 medoid: Paenibacillus alginolyticus DSM 5050 NBRC 15375 GCF 000422905 1
- AAI clade 3-13 medoid: Leptospira paudalimensis GCF 026151345 1
AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
AAI clade 17 medoid: Dorea hominis GCF 014287705 1
AAI clade 18 medoid: Massilia putida GCF 001941825 1
AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1

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