AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
• AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
• AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 3-1 medoid: Cytobacillus firmus GCF 900445365 1
  • AAI clade 3-2 medoid: Lysinibacillus irui GCF 028877475 1
    • AAI clade 3-2-1 medoid: Lysinibacillus boronitolerans JCM 21713 10a NBRC 103108 GCF 000772935 1
    • AAI clade 3-2-2 medoid: Rummeliibacillus pycnus GCF 002884495 1
    • AAI clade 3-2-3 medoid: Solibacillus faecavium GCF 014836905 1
    • AAI clade 3-2-4 medoid: Planococcus soli GCF 016881065 1
      • AAI clade 3-2-4-1 medoid: Planococcus donghaensis GCF 001687665 2
      • AAI clade 3-2-4-2 medoid: Planococcus halotolerans GCF 003289955 1
      • AAI clade 3-2-4-3 medoid: Planococcus soli GCF 016881065 1
      • AAI clade 3-2-4-4 medoid: Planococcus koreensis GCF 004761975 1
      • AAI clade 3-2-4-5 medoid: Planococcus massiliensis GCF 000821325 1
      • AAI clade 3-2-4-6 medoid: Planococcus beigongshangi GCF 016820495 1
        1 dataset: Planococcus beigongshangi GCF 016820495 1 (AAI: 100.0%)
      • AAI clade 3-2-4-7 medoid: Planococcus glaciei GCF 900099655 1
      • AAI clade 3-2-4-8 medoid: Planococcus salinus GCF 003719725 1
      • AAI clade 3-2-4-9 medoid: Planomicrobium soli GCF 003014655 1
    • AAI clade 3-2-5 medoid: Ureibacillus xyleni GCF 900217795 1
    • AAI clade 3-2-6 medoid: Planococcus citreus GCF 003664125 1
    • AAI clade 3-2-7 medoid: Psychrobacillus psychrodurans GCF 027563345 1
    • AAI clade 3-2-8 medoid: Sporosarcina highlanderae GCF 030433715 1
    • AAI clade 3-2-9 medoid: Bhargavaea massiliensis GCF 018390575 1
    • AAI clade 3-2-10 medoid: Sharpea azabuensis DSM 18934 GCF 000702165 1
  • AAI clade 3-3 medoid: Bacillus dicomae GCF 006494425 1
  • AAI clade 3-4 medoid: Staphylococcus petrasii GCF 004684865 1
  • AAI clade 3-5 medoid: Virgibacillus ndiopensis GCF 900187325 1
  • AAI clade 3-6 medoid: Listeria innocua GCF 024721565 1
  • AAI clade 3-7 medoid: Paenibacillus zanthoxyli JH29 GCF 000520715 1
  • AAI clade 3-8 medoid: Brevibacillus formosus GCF 003013405 1
  • AAI clade 3-9 medoid: Mesoplasma coleopterae GCF 002804245 1
  • AAI clade 3-10 medoid: Halalkalibacter alkaliphilus GCF 023555415 1
  • AAI clade 3-11 medoid: Mycoplasmopsis glycophila ATCC 35277 GCF 000687855 1
  • AAI clade 3-12 medoid: Paenibacillus alginolyticus DSM 5050 NBRC 15375 GCF 000422905 1
  • AAI clade 3-13 medoid: Leptospira paudalimensis GCF 026151345 1
• AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
• AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
• AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
• AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
• AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
• AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
• AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
• AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
• AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
• AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
• AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
• AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
• AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
• AAI clade 17 medoid: Dorea hominis GCF 014287705 1
• AAI clade 18 medoid: Massilia putida GCF 001941825 1
• AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
• AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
• AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
• AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
• AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
• AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
• AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
• AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
• AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
• AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
• AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
• AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
• AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
• AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
• AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
• AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1