AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
-
AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
-
AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
-
AAI clade 3-1
medoid: Cytobacillus firmus GCF 900445365 1
-
AAI clade 3-2
medoid: Lysinibacillus irui GCF 028877475 1
-
AAI clade 3-3
medoid: Bacillus dicomae GCF 006494425 1
-
AAI clade 3-4
medoid: Staphylococcus petrasii GCF 004684865 1
-
AAI clade 3-5
medoid: Virgibacillus ndiopensis GCF 900187325 1
-
AAI clade 3-6
medoid: Listeria innocua GCF 024721565 1
-
AAI clade 3-7
medoid: Paenibacillus zanthoxyli JH29 GCF 000520715 1
-
AAI clade 3-8
medoid: Brevibacillus formosus GCF 003013405 1
-
AAI clade 3-9
medoid: Mesoplasma coleopterae GCF 002804245 1
-
AAI clade 3-10
medoid: Halalkalibacter alkaliphilus GCF 023555415 1
-
AAI clade 3-11
medoid: Mycoplasmopsis glycophila ATCC 35277 GCF 000687855 1
-
AAI clade 3-11-1
medoid: Metamycoplasma neophronis GCF 006491995 1
-
AAI clade 3-11-2
medoid: Mycoplasma anserisalpingitidis GCF 007859615 1
-
AAI clade 3-11-3
medoid: Mycoplasmopsis canis PG 14 GCF 001553195 1
-
AAI clade 3-11-4
medoid: Mycoplasmopsis glycophila ATCC 35277 GCF 000687855 1
-
AAI clade 3-11-5
medoid: Mesomycoplasma molare ATCC 27746 GCF 000622165 1
-
AAI clade 3-11-6
medoid: Mycoplasmopsis arginini GCF 036352155 1
-
AAI clade 3-11-7
medoid: Mycoplasma testudineum GCF 002245785 1
-
AAI clade 3-11-8
medoid: Mycoplasmopsis fermentans PG18 GCF 000209735 1
-
AAI clade 3-11-9
medoid: Mycoplasmopsis columboralis ATCC 29258 GCF 000701845 1
-
AAI clade 3-11-10
medoid: Mycoplasmopsis iners ATCC 19705 GCF 000701805 1
-
AAI clade 3-11-11
medoid: Mesomycoplasma bovoculi M165 69 GCF 000524555 1
-
AAI clade 3-11-12
medoid: Mycoplasma collis ATCC 35278 GCF 000701825 1
-
AAI clade 3-11-13
medoid: Mycoplasma miroungirhinis GCF 013008815 1
-
AAI clade 3-11-14
medoid: Mycoplasma marinum GCF 004335975 1
-
AAI clade 3-11-15
medoid: Mycoplasma miroungigenitalium GCF 013008635 1
6 datasets: Mycoplasma miroungigenitalium GCF 013008635 1 (AAI: 100.0%), Mycoplasmopsis bovigenitalium GCF 900660525 1 (AAI: 63.76%), Mycoplasmopsis californica GCF 000695835 1 (AAI: 62.55%), Mycoplasmopsis mucosicanis GCF 006546935 1 (AAI: 62.55%), Mycoplasmopsis opalescens ATCC 27921 GCF 000712185 1 (AAI: 53.89%), and Mycoplasmopsis phocirhinis GCF 004216495 1 (AAI: 63.58%)
-
AAI clade 3-11-16
medoid: Mycoplasma phocae GCF 003332325 1
-
AAI clade 3-11-17
medoid: Mycoplasmopsis bovis PG45 GCF 000183385 1
-
AAI clade 3-11-1
medoid: Metamycoplasma neophronis GCF 006491995 1
-
AAI clade 3-12
medoid: Paenibacillus alginolyticus DSM 5050 NBRC 15375 GCF 000422905 1
-
AAI clade 3-13
medoid: Leptospira paudalimensis GCF 026151345 1
-
AAI clade 3-1
medoid: Cytobacillus firmus GCF 900445365 1
-
AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
-
AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
-
AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
-
AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
-
AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
-
AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
-
AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
-
AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
-
AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
-
AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
-
AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
-
AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
-
AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
-
AAI clade 17
medoid: Dorea hominis GCF 014287705 1
-
AAI clade 18
medoid: Massilia putida GCF 001941825 1
-
AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
-
AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
-
AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
-
AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
-
AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
-
AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
-
AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
-
AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
-
AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
-
AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
-
AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
-
AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
-
AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
-
AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
-
AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
-
AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1