AAI clade 3-1-29 | MiGA Online

skip navigation

AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
- AAI clade 3-1 medoid: Cytobacillus firmus GCF 900445365 1
  - AAI clade 3-1-1 medoid: Bacillus inaquosorum GCF 003148415 1
  - AAI clade 3-1-2 medoid: Priestia filamentosa GCF 002237735 1
  - AAI clade 3-1-3 medoid: Bacillus sonorensis NBRC 101234 KCTC 13918 GCF 001592005 1
  - AAI clade 3-1-4 medoid: Bacillus safensis FO 36b GCF 003097715 1
  - AAI clade 3-1-5 medoid: Bacillus badius GCF 001630115 1
  - AAI clade 3-1-6 medoid: Geobacillus kaustophilus NBRC 102445 GCF 000739955 1
  - AAI clade 3-1-7 medoid: Heyndrickxia faecalis GCF 018101145 1
  - AAI clade 3-1-8 medoid: Anoxybacillus gonensis GCF 030500585 1
  - AAI clade 3-1-9 medoid: Parageobacillus thermantarcticus GCF 900111865 1
  - AAI clade 3-1-10 medoid: Thomasclavelia cocleata GCF 024622895 1
  - AAI clade 3-1-11 medoid: Domibacillus iocasae GCF 001750285 1
  - AAI clade 3-1-12 medoid: Exiguobacterium undae DSM 14481 GCF 000620805 1
  - AAI clade 3-1-13 medoid: Heyndrickxia sporothermodurans GCF 003055085 1
  - AAI clade 3-1-14 medoid: Anoxybacillus voinovskiensis GCF 014196205 1
  - AAI clade 3-1-15 medoid: Sporosarcina globispora GCF 001274725 1
  - AAI clade 3-1-16 medoid: Peribacillus simplex NBRC 15720 DSM 1321 GCF 001591785 1
  - AAI clade 3-1-17 medoid: Rossellomorea arthrocnemi GCF 904424705 1
  - AAI clade 3-1-18 medoid: Fredinandcohnia onubensis GCF 002734215 1
  - AAI clade 3-1-19 medoid: Bacillus yapensis GCF 003966255 1
  - AAI clade 3-1-20 medoid: Cytobacillus massiliigabonensis GCF 900199725 1
  - AAI clade 3-1-21 medoid: Desulfobotulus mexicanus GCF 006175995 1
  - AAI clade 3-1-22 medoid: Exiguobacterium profundum GCF 025234635 1
  - AAI clade 3-1-23 medoid: Haploplasma axanthum ATCC 25176 GCF 000428705 1
  - AAI clade 3-1-24 medoid: Lederbergia citri GCF 018343625 1
  - AAI clade 3-1-25 medoid: Mesobacillus jeotgali GCF 002874535 1
  - AAI clade 3-1-26 medoid: Metabacillus idriensis GCF 009674765 1
  - AAI clade 3-1-27 medoid: Metabacillus litoralis GCF 007994985 1
  - AAI clade 3-1-28 medoid: Neobacillus vireti GCF 001026695 1
  - AAI clade 3-1-29 medoid: Neobacillus rhizophilus GCF 018343535 1
    
    AAI clade 3-1-29-1 medoid: Neobacillus rhizophilus GCF 018343535 1
    
    AAI clade 3-1-29-2 medoid: Neobacillus muris GCF 943193175 1
    
    AAI clade 3-1-29-3 medoid: Neobacillus endophyticus GCF 013248975 1
    
    AAI clade 3-1-29-4 medoid: Neobacillus mesonae GCF 001636315 1
  - AAI clade 3-1-30 medoid: Pallidibacillus thermolactis GCF 025660415 1
  - AAI clade 3-1-31 medoid: Sutcliffiella halmapala GCF 002019665 1
  - AAI clade 3-1-32 medoid: Turicibacter bilis GCF 018305205 1
  - AAI clade 3-1-33 medoid: Peribacillus acanthi GCF 003073175 1
  - AAI clade 3-1-34 medoid: Siminovitchia terrae GCF 003605405 2
  - AAI clade 3-1-35 medoid: Jeotgalibacillus alimentarius GCF 000829445 1
  - AAI clade 3-1-36 medoid: Terriglobus albidus GCF 025685425 1
- AAI clade 3-2 medoid: Lysinibacillus irui GCF 028877475 1
- AAI clade 3-3 medoid: Bacillus dicomae GCF 006494425 1
- AAI clade 3-4 medoid: Staphylococcus petrasii GCF 004684865 1
- AAI clade 3-5 medoid: Virgibacillus ndiopensis GCF 900187325 1
- AAI clade 3-6 medoid: Listeria innocua GCF 024721565 1
- AAI clade 3-7 medoid: Paenibacillus zanthoxyli JH29 GCF 000520715 1
- AAI clade 3-8 medoid: Brevibacillus formosus GCF 003013405 1
- AAI clade 3-9 medoid: Mesoplasma coleopterae GCF 002804245 1
- AAI clade 3-10 medoid: Halalkalibacter alkaliphilus GCF 023555415 1
- AAI clade 3-11 medoid: Mycoplasmopsis glycophila ATCC 35277 GCF 000687855 1
- AAI clade 3-12 medoid: Paenibacillus alginolyticus DSM 5050 NBRC 15375 GCF 000422905 1
- AAI clade 3-13 medoid: Leptospira paudalimensis GCF 026151345 1
AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
AAI clade 17 medoid: Dorea hominis GCF 014287705 1
AAI clade 18 medoid: Massilia putida GCF 001941825 1
AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1

A collaboration between