AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

• AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
• AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
• AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
• AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
• AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
• AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
• AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
• AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
• AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
• AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
• AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
• AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
• AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
• AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
• AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
  • AAI clade 15-1 medoid: Rhodobacter kunshanensis GCF 011059185 1
  • AAI clade 15-2 medoid: Salipiger pentaromativorans GCF 024721115 1
  • AAI clade 15-3 medoid: Paracoccus versutus GCF 003387045 1
  • AAI clade 15-4 medoid: Ruegeria intermedia GCF 900129345 1
    • AAI clade 15-4-1 medoid: Rhodobaca bogoriensis DSM 18756 GCF 004366635 1
    • AAI clade 15-4-2 medoid: Thalassovita aquimarina GCF 018219815 1
    • AAI clade 15-4-3 medoid: Celeribacter persicus GCF 003050785 1
    • AAI clade 15-4-4 medoid: Aliiroseovarius marinus GCF 004360145 1
    • AAI clade 15-4-5 medoid: Pontivivens ytuae GCF 015679265 1
    • AAI clade 15-4-6 medoid: Ruegeria denitrificans GCF 001458295 1
      • AAI clade 15-4-6-1 medoid: Ruegeria denitrificans GCF 001458295 1
      • AAI clade 15-4-6-2 medoid: Pseudodonghicola flavimaris GCF 030164425 1
      • AAI clade 15-4-6-3 medoid: Falsiruegeria litorea R37 GCF 900172225 1
        • AAI clade 15-4-6-3-1 medoid: Falsiruegeria litorea R37 GCF 900172225 1
        • AAI clade 15-4-6-3-2 medoid: Heliomarina baculiformis GCF 019966545 1
        • AAI clade 15-4-6-3-3 medoid: Aliishimia ponticola GCF 004803475 1
        • AAI clade 15-4-6-3-4 medoid: Arenibacterium arenosum GCF 016428585 1
        • AAI clade 15-4-6-3-5 medoid: Cognatiyoonia sediminum GCF 900129845 1
        • AAI clade 15-4-6-3-6 medoid: Marinibacterium profundimaris GCF 002210095 1
        • AAI clade 15-4-6-3-7 medoid: Planktotalea arctica GCF 002105285 1
        • AAI clade 15-4-6-3-8 medoid: Pontibaca salina GCF 016307205 1
        • AAI clade 15-4-6-3-9 medoid: Pseudaestuariivita rosea GCF 017592335 1
        • AAI clade 15-4-6-3-10 medoid: Tateyamaria omphalii GCF 014651375 1
          1 dataset: Tateyamaria omphalii GCF 014651375 1 (AAI: 100.0%)
        • AAI clade 15-4-6-3-11 medoid: Harenicola maris GCF 018524345 1
      • AAI clade 15-4-6-4 medoid: Ruegeria alba GCF 022321465 1
      • AAI clade 15-4-6-5 medoid: Shimia aestuarii GCF 900114635 1
    • AAI clade 15-4-7 medoid: Jannaschia seohaensis GCF 003149265 1
    • AAI clade 15-4-8 medoid: Rhodovulum kholense GCF 003053725 1
    • AAI clade 15-4-9 medoid: Palleronia pelagia GCF 900110115 1
    • AAI clade 15-4-10 medoid: Pseudooceanicola atlanticus GCF 000768315 1
    • AAI clade 15-4-11 medoid: Nioella sediminis GCF 001879695 1
    • AAI clade 15-4-12 medoid: Aliiruegeria lutimaris GCF 900099935 1
  • AAI clade 15-5 medoid: Phaeobacter piscinae GCF 002407245 1
  • AAI clade 15-6 medoid: Roseovarius marisflavi GCF 900142625 1
  • AAI clade 15-7 medoid: Limimaricola variabilis GCF 014195545 1
  • AAI clade 15-8 medoid: Thioclava marina GCF 002020135 1
  • AAI clade 15-9 medoid: Litoreibacter halocynthiae GCF 004365635 1
  • AAI clade 15-10 medoid: Paracoccus fontiphilus GCF 017356265 1
  • AAI clade 15-11 medoid: Sulfitobacter dubius GCF 900113435 1
• AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
• AAI clade 17 medoid: Dorea hominis GCF 014287705 1
• AAI clade 18 medoid: Massilia putida GCF 001941825 1
• AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
• AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
• AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
• AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
• AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
• AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
• AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
• AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
• AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
• AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
• AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
• AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
• AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
• AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
• AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
• AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1