AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
-
AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
-
AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
-
AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
-
AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
-
AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
-
AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
-
AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
-
AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
-
AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
-
AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
-
AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
-
AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
-
AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
-
AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
-
AAI clade 15-1
medoid: Rhodobacter kunshanensis GCF 011059185 1
-
AAI clade 15-1-1
medoid: Cereibacter azotoformans GCF 003050905 1
-
AAI clade 15-1-2
medoid: Frigidibacter albus GCF 014640395 1
-
AAI clade 15-1-3
medoid: Gemmobacter caeni GCF 003054195 1
-
AAI clade 15-1-4
medoid: Phaeovulum veldkampii DSM 11550 GCF 003034995 1
-
AAI clade 15-1-5
medoid: Fertoeibacter niger GCF 009380135 2
-
AAI clade 15-1-6
medoid: Gemmobacter nectariphilus DSM 15620 GCF 000429765 1
-
AAI clade 15-1-7
medoid: Haematobacter massiliensis GCF 000740795 1
-
AAI clade 15-1-8
medoid: Pararhodobacter aggregans GCF 003054005 1
-
AAI clade 15-1-9
medoid: Pseudorhodobacter ferrugineus DSM 5888 GCF 000420745 1
-
AAI clade 15-1-10
medoid: Rhodobacter kunshanensis GCF 011059185 1
-
AAI clade 15-1-11
medoid: Cypionkella psychrotolerans GCF 001294535 1
-
AAI clade 15-1-12
medoid: Defluviimonas sediminis GCF 025380365 1
-
AAI clade 15-1-13
medoid: Falsigemmobacter faecalis GCF 003863335 1
-
AAI clade 15-1-14
medoid: Falsirhodobacter algicola GCF 018279165 1
-
AAI clade 15-1-15
medoid: Tabrizicola oligotrophica GCF 011008935 1
-
AAI clade 15-1-16
medoid: Fuscovulum blasticum DSM 2131 GCF 003034965 1
-
AAI clade 15-1-17
medoid: Gemmobacter straminiformis GCF 014243445 1
-
AAI clade 15-1-18
medoid: Gemmobacter tilapiae GCF 014652215 1
-
AAI clade 15-1-19
medoid: Pseudogemmobacter bohemicus GCF 003290025 1
-
AAI clade 15-1-20
medoid: Pseudorhodobacter aquimaris GCF 001202025 1
-
AAI clade 15-1-21
medoid: Pseudotabrizicola formosa GCF 002900965 1
-
AAI clade 15-1-22
medoid: Tabrizicola thermarum GCF 003574395 1
-
AAI clade 15-1-23
medoid: Solirhodobacter olei GCF 004010155 1
-
AAI clade 15-1-24
medoid: Stagnihabitans tardus GCF 009925085 1
-
AAI clade 15-1-1
medoid: Cereibacter azotoformans GCF 003050905 1
-
AAI clade 15-2
medoid: Salipiger pentaromativorans GCF 024721115 1
-
AAI clade 15-3
medoid: Paracoccus versutus GCF 003387045 1
-
AAI clade 15-4
medoid: Ruegeria intermedia GCF 900129345 1
-
AAI clade 15-5
medoid: Phaeobacter piscinae GCF 002407245 1
-
AAI clade 15-6
medoid: Roseovarius marisflavi GCF 900142625 1
-
AAI clade 15-7
medoid: Limimaricola variabilis GCF 014195545 1
-
AAI clade 15-8
medoid: Thioclava marina GCF 002020135 1
-
AAI clade 15-9
medoid: Litoreibacter halocynthiae GCF 004365635 1
-
AAI clade 15-10
medoid: Paracoccus fontiphilus GCF 017356265 1
-
AAI clade 15-11
medoid: Sulfitobacter dubius GCF 900113435 1
-
AAI clade 15-1
medoid: Rhodobacter kunshanensis GCF 011059185 1
-
AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
-
AAI clade 17
medoid: Dorea hominis GCF 014287705 1
-
AAI clade 18
medoid: Massilia putida GCF 001941825 1
-
AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
-
AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
-
AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
-
AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
-
AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
-
AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
-
AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
-
AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
-
AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
-
AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
-
AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
-
AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
-
AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
-
AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
-
AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
-
AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1