AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
    • AAI clade 15-1 medoid: Rhodobacter kunshanensis GCF 011059185 1
    • AAI clade 15-2 medoid: Salipiger pentaromativorans GCF 024721115 1
      • AAI clade 15-2-1 medoid: Mameliella sediminis GCF 019218285 1
      • AAI clade 15-2-2 medoid: Salipiger abyssi GCF 001975705 1
      • AAI clade 15-2-3 medoid: Alloyangia pacifica GCF 900100725 1
      • AAI clade 15-2-4 medoid: Marivita geojedonensis GCF 002115805 1
        • AAI clade 15-2-4-1 medoid: Marinovum algicola GCF 900109145 1
        • AAI clade 15-2-4-2 medoid: Marivita cryptomonadis GCF 002115725 1
        • AAI clade 15-2-4-3 medoid: Mesobacterium pallidum GCF 019966535 1
          1 dataset: Mesobacterium pallidum GCF 019966535 1 (AAI: 100.0%)
        • AAI clade 15-2-4-4 medoid: Pseudaestuariivita atlantica GCF 001205715 1
        • AAI clade 15-2-4-5 medoid: Pseudoprimorskyibacter insulae GCF 900302505 1
        • AAI clade 15-2-4-6 medoid: Thalassococcus arenae GCF 019104745 1
        • AAI clade 15-2-4-7 medoid: Thalassococcus halodurans GCF 900108225 1
      • AAI clade 15-2-5 medoid: Palleronia marisminoris GCF 900113405 1
      • AAI clade 15-2-6 medoid: Pseudooceanicola onchidii GCF 004959925 1
      • AAI clade 15-2-7 medoid: Roseivivax jejudonensis GCF 900172265 1
      • AAI clade 15-2-8 medoid: Tropicibacter naphthalenivorans GCF 001458375 1
      • AAI clade 15-2-9 medoid: Albimonas donghaensis GCF 900106695 1
      • AAI clade 15-2-10 medoid: Primorskyibacter flagellatus GCF 900176485 1
      • AAI clade 15-2-11 medoid: Psychromarinibacter halotolerans GCF 029168315 1
      • AAI clade 15-2-12 medoid: Puniceibacterium confluentis GCF 007923445 1
      • AAI clade 15-2-13 medoid: Rhodosalinus halophilus GCF 003298775 1
      • AAI clade 15-2-14 medoid: Roseicyclus mahoneyensis GCF 003148775 1
      • AAI clade 15-2-15 medoid: Roseivivax halotolerans GCF 900115815 1
    • AAI clade 15-3 medoid: Paracoccus versutus GCF 003387045 1
    • AAI clade 15-4 medoid: Ruegeria intermedia GCF 900129345 1
    • AAI clade 15-5 medoid: Phaeobacter piscinae GCF 002407245 1
    • AAI clade 15-6 medoid: Roseovarius marisflavi GCF 900142625 1
    • AAI clade 15-7 medoid: Limimaricola variabilis GCF 014195545 1
    • AAI clade 15-8 medoid: Thioclava marina GCF 002020135 1
    • AAI clade 15-9 medoid: Litoreibacter halocynthiae GCF 004365635 1
    • AAI clade 15-10 medoid: Paracoccus fontiphilus GCF 017356265 1
    • AAI clade 15-11 medoid: Sulfitobacter dubius GCF 900113435 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1