AAI-based medoid clustering

The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.

  • AAI clade 1 medoid: Rahnella aceris GCF 011684115 1
  • AAI clade 2 medoid: Sinorhizobium saheli GCF 001651875 1
  • AAI clade 3 medoid: Oceanobacillus limi GCF 900111445 1
  • AAI clade 4 medoid: Pseudomonas alcaligenes GCF 900455475 1
  • AAI clade 5 medoid: Alkalibacterium pelagium GCF 007991315 1
  • AAI clade 6 medoid: Stenotrophomonas nematodicola GCF 009467805 1
  • AAI clade 7 medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
  • AAI clade 8 medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
  • AAI clade 9 medoid: Actinomyces gaoshouyii GCF 002072175 1
  • AAI clade 10 medoid: Micromonospora sagamiensis GCF 014680085 1
  • AAI clade 11 medoid: Nonomuraea indica GCF 002850745 1
  • AAI clade 12 medoid: Jiella avicenniae GCF 021390325 1
  • AAI clade 13 medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
  • AAI clade 14 medoid: Zeimonas arvi GCF 008039575 1
  • AAI clade 15 medoid: Cognatiyoonia koreensis GCF 900109295 1
    • AAI clade 15-1 medoid: Rhodobacter kunshanensis GCF 011059185 1
      • AAI clade 15-1-1 medoid: Cereibacter azotoformans GCF 003050905 1
      • AAI clade 15-1-2 medoid: Frigidibacter albus GCF 014640395 1
      • AAI clade 15-1-3 medoid: Gemmobacter caeni GCF 003054195 1
      • AAI clade 15-1-4 medoid: Phaeovulum veldkampii DSM 11550 GCF 003034995 1
      • AAI clade 15-1-5 medoid: Fertoeibacter niger GCF 009380135 2
      • AAI clade 15-1-6 medoid: Gemmobacter nectariphilus DSM 15620 GCF 000429765 1
      • AAI clade 15-1-7 medoid: Haematobacter massiliensis GCF 000740795 1
        2 datasets: Haematobacter missouriensis GCF 000740775 1 (AAI: 92.44%) and Haematobacter massiliensis GCF 000740795 1 (AAI: 100.0%)
      • AAI clade 15-1-8 medoid: Pararhodobacter aggregans GCF 003054005 1
      • AAI clade 15-1-9 medoid: Pseudorhodobacter ferrugineus DSM 5888 GCF 000420745 1
      • AAI clade 15-1-10 medoid: Rhodobacter kunshanensis GCF 011059185 1
      • AAI clade 15-1-11 medoid: Cypionkella psychrotolerans GCF 001294535 1
      • AAI clade 15-1-12 medoid: Defluviimonas sediminis GCF 025380365 1
      • AAI clade 15-1-13 medoid: Falsigemmobacter faecalis GCF 003863335 1
      • AAI clade 15-1-14 medoid: Falsirhodobacter algicola GCF 018279165 1
      • AAI clade 15-1-15 medoid: Tabrizicola oligotrophica GCF 011008935 1
      • AAI clade 15-1-16 medoid: Fuscovulum blasticum DSM 2131 GCF 003034965 1
      • AAI clade 15-1-17 medoid: Gemmobacter straminiformis GCF 014243445 1
      • AAI clade 15-1-18 medoid: Gemmobacter tilapiae GCF 014652215 1
      • AAI clade 15-1-19 medoid: Pseudogemmobacter bohemicus GCF 003290025 1
      • AAI clade 15-1-20 medoid: Pseudorhodobacter aquimaris GCF 001202025 1
      • AAI clade 15-1-21 medoid: Pseudotabrizicola formosa GCF 002900965 1
      • AAI clade 15-1-22 medoid: Tabrizicola thermarum GCF 003574395 1
      • AAI clade 15-1-23 medoid: Solirhodobacter olei GCF 004010155 1
      • AAI clade 15-1-24 medoid: Stagnihabitans tardus GCF 009925085 1
    • AAI clade 15-2 medoid: Salipiger pentaromativorans GCF 024721115 1
    • AAI clade 15-3 medoid: Paracoccus versutus GCF 003387045 1
    • AAI clade 15-4 medoid: Ruegeria intermedia GCF 900129345 1
    • AAI clade 15-5 medoid: Phaeobacter piscinae GCF 002407245 1
    • AAI clade 15-6 medoid: Roseovarius marisflavi GCF 900142625 1
    • AAI clade 15-7 medoid: Limimaricola variabilis GCF 014195545 1
    • AAI clade 15-8 medoid: Thioclava marina GCF 002020135 1
    • AAI clade 15-9 medoid: Litoreibacter halocynthiae GCF 004365635 1
    • AAI clade 15-10 medoid: Paracoccus fontiphilus GCF 017356265 1
    • AAI clade 15-11 medoid: Sulfitobacter dubius GCF 900113435 1
  • AAI clade 16 medoid: Legionella beliardensis GCF 900452395 1
  • AAI clade 17 medoid: Dorea hominis GCF 014287705 1
  • AAI clade 18 medoid: Massilia putida GCF 001941825 1
  • AAI clade 19 medoid: Phycicoccus avicenniae GCF 018139485 1
  • AAI clade 20 medoid: Lelliottia steviae GCF 015209785 1
  • AAI clade 21 medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
  • AAI clade 22 medoid: Aquifex aeolicus VF5 GCF 000008625 1
  • AAI clade 23 medoid: Campylobacter showae GCF 004803815 1
  • AAI clade 24 medoid: Mannheimia bovis GCF 014541205 1
  • AAI clade 25 medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
  • AAI clade 26 medoid: Neptunicella marina GCF 014270035 1
  • AAI clade 27 medoid: Sphingomonas sabuli GCF 014352855 1
  • AAI clade 28 medoid: Luteolibacter marinus GCF 014904755 1
  • AAI clade 29 medoid: Mycoplasmoides genitalium GCF 036689675 1
  • AAI clade 30 medoid: Brevundimonas huaxiensis GCF 014218725 1
  • AAI clade 31 medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
  • AAI clade 32 medoid: Glycomyces dulcitolivorans GCF 003265355 1
  • AAI clade 33 medoid: Methylovulum miyakonense HT12 GCF 000384075 1
  • AAI clade 34 medoid: Candidatus Fiminaster equi GCA 018064745 1