AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
-
AAI clade 1
medoid: Rahnella aceris GCF 011684115 1
-
AAI clade 2
medoid: Sinorhizobium saheli GCF 001651875 1
-
AAI clade 3
medoid: Oceanobacillus limi GCF 900111445 1
-
AAI clade 4
medoid: Pseudomonas alcaligenes GCF 900455475 1
-
AAI clade 5
medoid: Alkalibacterium pelagium GCF 007991315 1
-
AAI clade 6
medoid: Stenotrophomonas nematodicola GCF 009467805 1
-
AAI clade 7
medoid: Thermaerobacter marianensis DSM 12885 GCF 000184705 1
-
AAI clade 8
medoid: Megamonas hypermegale DSM 1672 GCF 000423385 1
-
AAI clade 9
medoid: Actinomyces gaoshouyii GCF 002072175 1
-
AAI clade 10
medoid: Micromonospora sagamiensis GCF 014680085 1
-
AAI clade 11
medoid: Nonomuraea indica GCF 002850745 1
-
AAI clade 11-1
medoid: Streptomyces tanashiensis GCF 014648895 1
-
AAI clade 11-2
medoid: Kribbella sindirgiensis GCF 004331435 1
-
AAI clade 11-3
medoid: Corynebacterium lehmanniae GCF 027570055 1
-
AAI clade 11-4
medoid: Streptomyces sabulosicollis GCF 016103465 1
-
AAI clade 11-5
medoid: Streptomyces tricolor GCF 002155905 1
-
AAI clade 11-6
medoid: Nocardiopsis dassonvillei GCF 900638215 1
-
AAI clade 11-7
medoid: Nonomuraea jabiensis GCF 014204795 1
-
AAI clade 11-8
medoid: Nocardioides pinisoli GCF 024199985 1
-
AAI clade 11-9
medoid: Actinomadura citrea GCF 013409045 1
-
AAI clade 11-9-1
medoid: Actinomadura citrea GCF 013409045 1
-
AAI clade 11-9-1-1
medoid: Actinomadura citrea GCF 013409045 1
-
AAI clade 11-9-1-1-1
medoid: Actinomadura citrea GCF 013409045 1
-
AAI clade 11-9-1-1-1-1
medoid: Actinoallomurus rhizosphaericola GCF 024055675 1
-
AAI clade 11-9-1-1-1-2
medoid: Actinomadura citrea GCF 013409045 1
-
AAI clade 11-9-1-1-1-3
medoid: Actinomadura chibensis GCF 008085895 1
-
AAI clade 11-9-1-1-1-4
medoid: Actinomadura geliboluensis GCF 005889745 1
-
AAI clade 11-9-1-1-1-5
medoid: Actinomadura hibisca NBRC 15177 GCF 001552635 1
-
AAI clade 11-9-1-1-1-6
medoid: Thermomonospora catenispora GCF 006363815 1
-
AAI clade 11-9-1-1-1-7
medoid: Acidothermus cellulolyticus 11B GCF 000015025 1
-
AAI clade 11-9-1-1-1-8
medoid: Actinoallomurus bryophytorum GCF 006716425 1
-
AAI clade 11-9-1-1-1-9
medoid: Actinocorallia herbida GCF 003751225 1
-
AAI clade 11-9-1-1-1-10
medoid: Actinocorallia populi GCF 002995495 1
-
AAI clade 11-9-1-1-1-11
medoid: Actinomadura algeriensis GCF 014873935 1
-
AAI clade 11-9-1-1-1-12
medoid: Actinomadura rayongensis GCF 009831215 1
-
AAI clade 11-9-1-1-1-13
medoid: Actinomadura barringtoniae GCF 017573505 1
-
AAI clade 11-9-1-1-1-14
medoid: Actinomadura craniellae GCF 003289645 1
-
AAI clade 11-9-1-1-1-15
medoid: Actinomadura flavalba DSM 45200 GCF 000374305 1
-
AAI clade 11-9-1-1-1-16
medoid: Actinomadura macra NBRC 14102 GCF 001552215 1
-
AAI clade 11-9-1-1-1-17
medoid: Actinomadura hallensis GCF 006716765 1
-
AAI clade 11-9-1-1-1-18
medoid: Actinomadura harenae GCF 003696215 1
-
AAI clade 11-9-1-1-1-19
medoid: Actinomadura litoris GCF 009733595 1
-
AAI clade 11-9-1-1-1-20
medoid: Actinomadura macrotermitis GCF 009604375 1
-
AAI clade 11-9-1-1-1-21
medoid: Actinomadura montaniterrae GCF 008923365 1
-
AAI clade 11-9-1-1-1-22
medoid: Actinomadura spongiicola GCF 003432485 1
-
AAI clade 11-9-1-1-1-23
medoid: Actinomadura rubrobrunea NBRC 15275 GCF 001552235 1
-
AAI clade 11-9-1-1-1-24
medoid: Anaerosoma tenue GCF 023161965 1
-
AAI clade 11-9-1-1-1-25
medoid: Berryella wangjianweii GCF 013201155 1
-
AAI clade 11-9-1-1-1-26
medoid: Parafrankia colletiae GCF 001854655 1
2 datasets: Parafrankia colletiae GCF 001854655 1 (AAI: 100.0%) and Parafrankia elaeagni GCF 000374165 1 (AAI: 96.17%)
-
AAI clade 11-9-1-1-1-27
medoid: Parvivirga hydrogeniphila GCF 023371205 1
-
AAI clade 11-9-1-1-1-28
medoid: Thermomonospora umbrina GCF 003386555 1
-
AAI clade 11-9-1-1-1-29
medoid: Trebonia kvetii GCF 007827045 1
-
AAI clade 11-9-1-1-1-1
medoid: Actinoallomurus rhizosphaericola GCF 024055675 1
-
AAI clade 11-9-1-1-2
medoid: Ilumatobacter coccineus YM16 304 GCF 000348785 1
-
AAI clade 11-9-1-1-1
medoid: Actinomadura citrea GCF 013409045 1
-
AAI clade 11-9-1-2
medoid: Euzebya rosea GCF 003073135 1
-
AAI clade 11-9-1-1
medoid: Actinomadura citrea GCF 013409045 1
-
AAI clade 11-9-2
medoid: Solirubrobacter pauli GCF 003633755 1
-
AAI clade 11-9-1
medoid: Actinomadura citrea GCF 013409045 1
-
AAI clade 11-1
medoid: Streptomyces tanashiensis GCF 014648895 1
-
AAI clade 12
medoid: Jiella avicenniae GCF 021390325 1
-
AAI clade 13
medoid: Chitinophaga terrae ex Kim and Jung 2007 GCF 900107795 1
-
AAI clade 14
medoid: Zeimonas arvi GCF 008039575 1
-
AAI clade 15
medoid: Cognatiyoonia koreensis GCF 900109295 1
-
AAI clade 16
medoid: Legionella beliardensis GCF 900452395 1
-
AAI clade 17
medoid: Dorea hominis GCF 014287705 1
-
AAI clade 18
medoid: Massilia putida GCF 001941825 1
-
AAI clade 19
medoid: Phycicoccus avicenniae GCF 018139485 1
-
AAI clade 20
medoid: Lelliottia steviae GCF 015209785 1
-
AAI clade 21
medoid: Natrarchaeobaculum aegyptiacum GCF 002156705 1
-
AAI clade 22
medoid: Aquifex aeolicus VF5 GCF 000008625 1
-
AAI clade 23
medoid: Campylobacter showae GCF 004803815 1
-
AAI clade 24
medoid: Mannheimia bovis GCF 014541205 1
-
AAI clade 25
medoid: Solobacterium moorei DSM 22971 GCF 000425005 1
-
AAI clade 26
medoid: Neptunicella marina GCF 014270035 1
-
AAI clade 27
medoid: Sphingomonas sabuli GCF 014352855 1
-
AAI clade 28
medoid: Luteolibacter marinus GCF 014904755 1
-
AAI clade 29
medoid: Mycoplasmoides genitalium GCF 036689675 1
-
AAI clade 30
medoid: Brevundimonas huaxiensis GCF 014218725 1
-
AAI clade 31
medoid: Lysobacter spongiicola DSM 21749 GCF 900167055 1
-
AAI clade 32
medoid: Glycomyces dulcitolivorans GCF 003265355 1
-
AAI clade 33
medoid: Methylovulum miyakonense HT12 GCF 000384075 1
-
AAI clade 34
medoid: Candidatus Fiminaster equi GCA 018064745 1